RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 OAZ1P54368 228 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 ANO4Q32M45 955 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 GRAMD4Q6IC98 578 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 FAF2Q96CS3 445 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 PTCD3Q96EY7 689 aaKnown RBP13.4□□□□□ -0.26
PTPRN-202ENST00000409251 TUBB6Q9BUF5 446 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 KCND2Q9NZV8 630 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 TAGLN3Q9UI15 199 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 NENFQ9UMX5 172 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 APOBEC2Q9Y235 224 aaKnown RBP13.4□□□□□ -0.26
PTPRN-202ENST00000409251 DNAJC16Q9Y2G8 782 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 MCM3APO60318 1980 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 DYNC1LI2O43237 492 aaPredicted RBP13.4□□□□□ -0.26
PTPRN-202ENST00000409251 STBD1O95210 358 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 ETFBP38117 255 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 DNAJC24Q6P3W2 148 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 MAP4K3Q8IVH8 894 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 OLIG1Q8TAK6 271 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.4□□□□□ -0.26
PTPRN-202ENST00000409251 PPWD1Q96BP3 646 aaKnown RBP13.4□□□□□ -0.26
PTPRN-202ENST00000409251 MINDY3Q9H8M7 445 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 ZNF232Q9UNY5 417 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 PPP2R3BQ9Y5P8 575 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 ZNF646O15015 1829 aaPredicted RBP13.4□□□□□ -0.26
PTPRN-202ENST00000409251 H3BSA7 217 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 TYROBPO43914 113 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 EEF1DP3Q658K8 133 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 ITPRIPL1Q6GPH6 555 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 FAM156AQ8NDB6 213 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 GPRC5AQ8NFJ5 357 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 BRI3BPQ8WY22 251 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 PFDN4Q9NQP4 134 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 SMYD2Q9NRG4 433 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 SLC17A6Q9P2U8 582 aa13.4□□□□□ -0.26
PTPRN-202ENST00000409251 CST3P01034 146 aaPredicted RBP13.39□□□□□ -0.27
PTPRN-202ENST00000409251 GZMAP12544 262 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 RAP1GAPP47736 663 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 CHN2P52757 468 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 CYP24A1Q07973 514 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 MARK4Q96L34 752 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 YIPF2Q9BWQ6 316 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 UNKQ9C0B0 810 aaKnown RBP13.39□□□□□ -0.27
PTPRN-202ENST00000409251 RAB6BQ9NRW1 208 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 A0A1B0GTW7 788 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 PRPF4O43172 522 aaKnown RBP eCLIP13.39□□□□□ -0.27
PTPRN-202ENST00000409251 LIASO43766 372 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 GRAP2O75791 330 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 HLA-DRAP01903 254 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 INSRRP14616 1297 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 NAA20P61599 178 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 LAMTOR4Q0VGL1 99 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 LSAMPQ13449 338 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 KIZQ2M2Z5 673 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 NOL9Q5SY16 702 aaKnown RBP13.39□□□□□ -0.27
PTPRN-202ENST00000409251 KLHDC10Q6PID8 442 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 FAM71AQ8IYT1 594 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 NLRP7Q8WX94 980 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 NR1H4Q96RI1 486 aaPredicted RBP13.39□□□□□ -0.27
PTPRN-202ENST00000409251 PHF24Q9UPV7 400 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 HES2Q9Y543 173 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 A0A087WZ62 844 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 MAFGO15525 162 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 PROSCO94903 275 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 CYP1A2P05177 515 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 DLDP09622 509 aaKnown RBP13.39□□□□□ -0.27
PTPRN-202ENST00000409251 SLC1A1P43005 524 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 CRADDP78560 199 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 STX3Q13277 289 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 CLEC16AQ2KHT3 1053 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 SH3D19Q5HYK7 790 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 FAM160B1Q5W0V3 765 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 KRT80Q6KB66 452 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 GPAT2Q6NUI2 795 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 METTL7BQ6UX53 244 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 NPNTQ6UXI9 565 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 SESTD1Q86VW0 696 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 FDXACB1Q9BRP7 624 aaPredicted RBP13.39□□□□□ -0.27
PTPRN-202ENST00000409251 ARMC7Q9H6L4 198 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 SOX13Q9UN79 622 aa13.39□□□□□ -0.27
PTPRN-202ENST00000409251 RPL10P27635 214 aaKnown RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 PCSK6P29122 969 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 ABCD1P33897 745 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 LMNB2Q03252 620 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 GLRA4Q5JXX5 417 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 USP50Q70EL3 339 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 FASTKD5Q7L8L6 764 aaKnown RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 WDR75Q8IWA0 830 aaKnown RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 DNERQ8NFT8 737 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 CCT7Q99832 543 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 GBA2Q9HCG7 927 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 RABGEF1Q9UJ41 708 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 CLUHO75153 1309 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 COL11A1P12107 1806 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 A0A0J9YVX5 310 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 TM7SF2O76062 418 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 UQCRBP14927 111 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 MUTP22033 750 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 STT3AP46977 705 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 NUDT2P50583 147 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 COPAP53621 1224 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms