RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 KCNT2Q6UVM3 1135 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 FAM47EQ6ZV65 393 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 SERINC5Q86VE9 423 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 LGI2Q8N0V4 545 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 SH2D3CQ8N5H7 860 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 PXYLP1Q8TE99 480 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 NDRG1Q92597 394 aaKnown RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 MCUR1Q96AQ8 359 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 CORO1BQ9BR76 489 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 TSEN34Q9BSV6 310 aaKnown RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 FRMD8P1Q9BZ68 369 aaPredicted RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 DCLK3Q9C098 648 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 OR12D3Q9UGF7 316 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 E5RI56 91 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 AP3B1O00203 1094 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 CLGNO14967 610 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 CTIFO43310 598 aaKnown RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 SUN1O94901 812 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 RARGP13631 454 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 HDCP19113 662 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 IGFBP4P22692 258 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 TAS2R40P59535 323 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 ASPHQ12797 758 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 PPIGQ13427 754 aaKnown RBP eCLIP9.4□□□□□ -0.9
LIG4-202ENST00000405925 LRRC14Q15048 493 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 PABPC1LQ4VXU2 614 aaKnown RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 HECTD3Q5T447 861 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 PLPP4Q5VZY2 271 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 C4orf22Q6V702 233 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 TTC8Q8TAM2 541 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 MYCBPAPQ8TBZ2 947 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 HDAC7Q8WUI4 952 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 ALG3Q92685 438 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 ALKBH8Q96BT7 664 aaKnown RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 FIZ1Q96SL8 496 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 C10orf88Q9H8K7 445 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 AGO3Q9H9G7 860 aaKnown RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 XAB2Q9HCS7 855 aaKnown RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 NT5MQ9NPB1 228 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 MSRAQ9UJ68 235 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 MAST2Q6P0Q8 1798 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 SMAPO00193 183 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 SPAG7O75391 227 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 MATKP42679 507 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 TMPRSS15P98073 1019 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 INTS6LQ5JSJ4 861 aaKnown RBP9.4□□□□□ -0.91
LIG4-202ENST00000405925 VARS2Q5ST30 1063 aaKnown RBP9.4□□□□□ -0.91
LIG4-202ENST00000405925 CCDC149Q6ZUS6 474 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 THOC1Q96FV9 657 aaKnown RBP9.4□□□□□ -0.91
LIG4-202ENST00000405925 PCED1BQ96HM7 432 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 ATP6V1G3Q96LB4 118 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 TBC1D13Q9NVG8 400 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.4□□□□□ -0.91
LIG4-202ENST00000405925 HMGXB4Q9UGU5 601 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 NOCTQ9UK39 431 aaKnown RBP9.4□□□□□ -0.91
LIG4-202ENST00000405925 SLC30A1Q9Y6M5 507 aa9.4□□□□□ -0.91
LIG4-202ENST00000405925 TMEM191CA6NGB0 347 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 F8W8V4 182 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 TLR5O60602 858 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 SYN1P17600 705 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 RPL17P18621 184 aaKnown RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 FDFT1P37268 417 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 LBX1P52954 281 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 ENPEPQ07075 957 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 RBM23Q86U06 439 aaKnown RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 STAMBPL1Q96FJ0 436 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 PKNOX2Q96KN3 472 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 TRIM56Q9BRZ2 755 aaKnown RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 GPR63Q9BZJ6 419 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 GNEQ9Y223 722 aaKnown RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 RPS6KL1Q9Y6S9 549 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 MYH4Q9Y623 1939 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 IGKV6-21A0A0C4DH24 114 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 POLBP06746 335 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 ASPAP45381 313 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 POU5F1Q01860 360 aaKnown RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 NSUN2Q08J23 767 aaKnown RBP eCLIP9.39□□□□□ -0.91
LIG4-202ENST00000405925 MMRN1Q13201 1228 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 SOWAHAQ2M3V2 549 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 TIGD7Q6NT04 549 aaPredicted RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 BLOC1S5Q8TDH9 187 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 PTPRN2Q92932 1015 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 TMA16Q96EY4 203 aaKnown RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 PCDH9Q9HC56 1237 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 ATP13A1Q9HD20 1204 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 C20orf96Q9NUD7 363 aaPredicted RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 NDFIP2Q9NV92 336 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 NAALADL1Q9UQQ1 740 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 COL24A1Q17RW2 1714 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 RBAK-RBAKDNI3L0D1 243 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 APOC4-APOC2K7ER74 178 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 APOC2P02655 101 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 TGM2P21980 687 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 TAF10Q12962 218 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 LPIN1Q14693 890 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 POLD3Q15054 466 aaPredicted RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 MARC1Q5VT66 337 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 LRRC38Q5VT99 294 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 RAP1GAP2Q684P5 730 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 VSTM1Q6UX27 236 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms