RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MAML2Q8IZL2 1156 aaPredicted RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 SCML4Q8N228 414 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 ELMOD1Q8N336 334 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 WDTC1Q8N5D0 677 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 SLC30A5Q8TAD4 765 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 SLC35F5Q8WV83 523 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 KCTD13Q8WZ19 329 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 MYRFLQ96LU7 910 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 ASB16Q96NS5 453 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 PRRX2Q99811 253 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 TTLL2Q9BWV7 592 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 ZFP14Q9HCL3 533 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 DMAP1Q9NPF5 467 aaPredicted RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 RBM12Q9NTZ6 932 aaKnown RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 COMMD8Q9NX08 183 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 ARHGAP20Q9P2F6 1191 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 CYTH4Q9UIA0 394 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 MAGED2Q9UNF1 606 aaPredicted RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 GPR179Q6PRD1 2367 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 SSU72P8A0A1W2PR75 194 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 KANSL1LA0AUZ9 987 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 HEPACAM2A8MVW5 462 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 SCAMP3O14828 347 aaKnown RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 XPO1O14980 1071 aaKnown RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 THAP12O43422 761 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 AP1G2O75843 785 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 MICAL2O94851 1124 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 ZIC2O95409 532 aaPredicted RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 CALCAP01258 141 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 TPM1P09493 284 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 SP9P0CG40 484 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 UNGP13051 313 aaPredicted RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 CD19P15391 556 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 USP8P40818 1118 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 NBL1P41271 181 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 ALDH1A3P47895 512 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 EPHB3P54753 998 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 ADKP55263 362 aaKnown RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 NOMO3P69849 1222 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 CYP27A1Q02318 531 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 CSTF1Q05048 431 aaKnown RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 TNK2Q07912 1038 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 ASIC2Q16515 512 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 LPAL2Q16609 132 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 DDR2Q16832 855 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 GOLGA7BQ2TAP0 167 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 GPR158Q5T848 1215 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 TRIM72Q6ZMU5 477 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 ZNF571Q7Z3V5 609 aaPredicted RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 DNAJB7Q7Z6W7 309 aaPredicted RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 TMEM139Q8IV31 216 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 SLC20A1Q8WUM9 679 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 NKD2Q969F2 451 aaPredicted RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 PSMG2Q969U7 264 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 NXPE3Q969Y0 559 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 TRMT2BQ96GJ1 504 aaKnown RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 KCNK16Q96T55 309 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 HINFPQ9BQA5 517 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 ATXN3LQ9H3M9 355 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 HAUS4Q9H6D7 363 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 LTB4R2Q9NPC1 389 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 AVENQ9NQS1 362 aaPredicted RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 KRT82Q9NSB4 513 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 POLR3BQ9NW08 1133 aaPredicted RBP9.67□□□□□ -0.86
VPS53-203ENST00000401468 C2orf42Q9NWW7 574 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 ASB3Q9Y575 518 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 USP3Q9Y6I4 520 aa9.67□□□□□ -0.86
VPS53-203ENST00000401468 CEP250Q9BV73 2442 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 ANKRD11Q6UB99 2663 aaPredicted RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 F8VP50 259 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 ECI2O75521 394 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 MMEP08473 750 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 GZMAP12544 262 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 HMGA1P17096 107 aaKnown RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 ADORA2BP29275 332 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 GABRB2P47870 512 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 GSCP56915 257 aaPredicted RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 STARD6P59095 220 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 RPL10AP62906 217 aaKnown RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 CENPCQ03188 943 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 PDE4CQ08493 712 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 KLHL30Q0D2K2 578 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 NAIF1Q69YI7 327 aaPredicted RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 TRIM68Q6AZZ1 485 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 PMF1Q6P1K2 205 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 DENND1BQ6P3S1 775 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 TXNDC11Q6PKC3 985 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 TMEM110Q86TL2 294 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 ARID3BQ8IVW6 561 aaPredicted RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 C1orf210Q8IVY1 113 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 KIAA2013Q8IYS2 634 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 RIN3Q8TB24 985 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 CPLX3Q8WVH0 158 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 SMARCD2Q92925 531 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 ELSPBP1Q96BH3 223 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 HSFY1Q96LI6 401 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 PCDHB18PQ96TA0 734 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 AGPAT1Q99943 283 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 TRMT61BQ9BVS5 477 aaKnown RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 KLF16Q9BXK1 252 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms