RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NCF2P19878 526 aaPredicted RBP21.72■■□□□ 1.07
CTCF-202ENST00000401394 YWHAEP62258 255 aaKnown RBP21.72■■□□□ 1.07
CTCF-202ENST00000401394 TUBB3Q13509 450 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 KRT81Q14533 505 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 Q3C1V9 767 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 FAM219BQ5XKK7 198 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 DLK2Q6UY11 383 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 SAMD7Q7Z3H4 446 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 WDR49Q8IV35 697 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 TEPSINQ96N21 525 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 CXCL16Q9H2A7 254 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 CLIC5Q9NZA1 410 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 BTBD7Q9P203 1132 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 ANGPTL2Q9UKU9 493 aa21.72■■□□□ 1.07
CTCF-202ENST00000401394 SDR42E2A6NKP2 422 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 LDHAP00338 332 aaKnown RBP21.71■■□□□ 1.07
CTCF-202ENST00000401394 IQCF3P0C7M6 154 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 FBXL19Q6PCT2 694 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 NET1Q7Z628 596 aaPredicted RBP21.71■■□□□ 1.07
CTCF-202ENST00000401394 RNF148Q8N7C7 305 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 C7orf26Q96N11 449 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 TUBB6Q9BUF5 446 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 WWP1Q9H0M0 922 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 WDR27A2RRH5 827 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 ZBED1O96006 694 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 APOEP02649 317 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 ITGB3P05106 788 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 CALRP27797 417 aaKnown RBP21.71■■□□□ 1.07
CTCF-202ENST00000401394 AP2B1P63010 937 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 N4BP2L1Q5TBK1 243 aaPredicted RBP21.71■■□□□ 1.07
CTCF-202ENST00000401394 ANGEL2Q5VTE6 544 aaKnown RBP21.71■■□□□ 1.07
CTCF-202ENST00000401394 PCDHGC3Q9UN70 934 aa21.71■■□□□ 1.07
CTCF-202ENST00000401394 MAFBQ9Y5Q3 323 aaPredicted RBP21.71■■□□□ 1.07
CTCF-202ENST00000401394 A8MXQ7 604 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 SPATA31C2B4DYI2 1134 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 CDH5P33151 784 aaPredicted RBP21.7■■□□□ 1.06
CTCF-202ENST00000401394 FAM183BPQ6ZVS7 135 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 SCUBE3Q8IX30 993 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 GORASP1Q9BQQ3 440 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 INO80B-WBP1J3KQ70 363 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 SERPINB6P35237 376 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 TCF7P36402 384 aaPredicted RBP21.7■■□□□ 1.06
CTCF-202ENST00000401394 LY6KQ17RY6 165 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 C10orf107Q8IVU9 208 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 LPAR1Q92633 364 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 AZIN2Q96A70 460 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 RNF157Q96PX1 679 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 GCNAQ96QF7 691 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 ACO2Q99798 780 aaKnown RBP21.7■■□□□ 1.06
CTCF-202ENST00000401394 SPATA16Q9BXB7 569 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 INO80BQ9C086 356 aaPredicted RBP21.7■■□□□ 1.06
CTCF-202ENST00000401394 S100A14Q9HCY8 104 aa21.7■■□□□ 1.06
CTCF-202ENST00000401394 CCR10P46092 362 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 BCAR1P56945 870 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 SESN2P58004 480 aaPredicted RBP21.69■■□□□ 1.06
CTCF-202ENST00000401394 LAMB3Q13751 1172 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 C1orf127Q8N9H9 656 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 DEPDC1BQ8WUY9 529 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 MIS12Q9H081 205 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 TMPRSS4Q9NRS4 437 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 PPME1Q9Y570 386 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 KLHL33A6NCF5 533 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 SNNO75324 88 aaPredicted RBP21.69■■□□□ 1.06
CTCF-202ENST00000401394 ALDOAP04075 364 aaKnown RBP21.69■■□□□ 1.06
CTCF-202ENST00000401394 TRIP10Q15642 601 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 TEDDM1Q5T9Z0 273 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 STYK1Q6J9G0 422 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 FRMD7Q6ZUT3 714 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 CMC1Q7Z7K0 106 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 DEFB107AQ8IZN7 70 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 OR6Y1Q8NGX8 325 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 SIGLEC10Q96LC7 697 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 CPSF3Q9UKF6 684 aaKnown RBP21.69■■□□□ 1.06
CTCF-202ENST00000401394 hCG_2014768A0A024R1R8 64 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 ANKRD33BA6NCL7 494 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 CAPN8A6NHC0 703 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 TPP1O14773 563 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 SIN3BO75182 1162 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 PIGRP01833 764 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 PRKCBP05771 671 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 GPD2P43304 727 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 CXCL9Q07325 125 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 HIC1Q14526 733 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 TRMT5Q32P41 509 aaKnown RBP21.69■■□□□ 1.06
CTCF-202ENST00000401394 RDM1Q8NG50 284 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 GDPD5Q8WTR4 605 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 CLEC4CQ8WTT0 213 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 RSAD1Q9HA92 442 aa21.69■■□□□ 1.06
CTCF-202ENST00000401394 E9PBE3 544 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 KLHL41O60662 606 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 CRABP2P29373 138 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 POLR2BP30876 1174 aaKnown RBP21.68■■□□□ 1.06
CTCF-202ENST00000401394 PTPN11Q06124 597 aaPredicted RBP21.68■■□□□ 1.06
CTCF-202ENST00000401394 LAMTOR4Q0VGL1 99 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 LIN52Q52LA3 116 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 ATG16L1Q676U5 607 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 ARHGAP24Q8N264 748 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 FAM49BQ9NUQ9 324 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 DDX43Q9NXZ2 648 aaKnown RBP21.68■■□□□ 1.06
CTCF-202ENST00000401394 GOLGA8QA0A0J9YX86 632 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms