RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 OR6Y1Q8NGX8 325 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 GDAP1Q8TB36 358 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 SLC25A43Q8WUT9 341 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 HOXB13Q92826 284 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 NKD2Q969F2 451 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF764Q96H86 408 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 FNBP1Q96RU3 617 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 SLX1AQ9BQ83 275 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 USP44Q9H0E7 712 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 RABEP2Q9H5N1 569 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 ERVMER34-1Q9H9K5 563 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 G6PC2Q9NQR9 355 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 RBM12Q9NTZ6 932 aaKnown RBP4.46□□□□□ -1.7
HMGB1-204ENST00000399489 COG5Q9UP83 839 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 DMRT1Q9Y5R6 373 aa4.46□□□□□ -1.7
HMGB1-204ENST00000399489 CCDC69A6NI79 296 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 KRTAP29-1A8MX34 341 aaPredicted RBP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 PLOD2O00469 737 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 MPHOSPH10O00566 681 aaKnown RBP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 SH2B2O14492 632 aaPredicted RBP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 NRP1O14786 923 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 VILLO15195 856 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 RECQL4O94761 1208 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 F9P00740 461 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 ATP5BP06576 529 aaKnown RBP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 HSPA1AP0DMV8 641 aaKnown RBP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 HSPA1BP0DMV9 641 aaKnown RBP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 MALP21145 153 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 RGS2P41220 211 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 LIMK1P53667 647 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 ANTXR2P58335 489 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 IL1RL1Q01638 556 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 SEMA3AQ14563 771 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 TAF7Q15545 349 aaPredicted RBP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 RABL3Q5HYI8 236 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 LAIR1Q6GTX8 287 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 UNC45BQ8IWX7 931 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 CMTM4Q8IZR5 234 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 GALNT4Q8N4A0 578 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 MB21D1Q8N884 522 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 PPP1R14CQ8TAE6 165 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 UTP15Q8TED0 518 aaKnown RBP4.45□□□□□ -1.7
HMGB1-204ENST00000399489 TBC1D5Q92609 795 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 HIST1H2AHQ96KK5 128 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 HIST1H2AJQ99878 128 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 EPC1Q9H2F5 836 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 MUC13Q9H3R2 512 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 WDCPQ9H6R7 721 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 RXFP3Q9NSD7 469 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 DECR2Q9NUI1 292 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 TBC1D14Q9P2M4 693 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF212Q9UDV6 495 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 HSF4Q9ULV5 492 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 MED16Q9Y2X0 877 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 XDHP47989 1333 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 MYPNQ86TC9 1320 aa4.45□□□□□ -1.7
HMGB1-204ENST00000399489 CC2D2AQ9P2K1 1620 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 BTN3A1O00481 513 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 FOXN1O15353 648 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 IPO8O15397 1037 aaKnown RBP4.44□□□□□ -1.7
HMGB1-204ENST00000399489 KCNQ3O43525 872 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 FMO6PO60774 539 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 TBX10O75333 385 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 ENDOD1O94919 500 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 GUCA1CO95843 209 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 IFNAR1P17181 557 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 EIF2DP41214 584 aaKnown RBP4.44□□□□□ -1.7
HMGB1-204ENST00000399489 SLC6A9P48067 706 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 TLE1Q04724 770 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 SCAPQ12770 1279 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 TOB2Q14106 344 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-204ENST00000399489 TNIP1Q15025 636 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 NOMO1Q15155 1222 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 PTPAQ15257 358 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 MAPKAPK3Q16644 382 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 HSP90AB3PQ58FF7 597 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 LY6G5CQ5SRR4 150 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 PRAMEF14Q5SWL7 426 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 EMC10Q5UCC4 262 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 RAB12Q6IQ22 244 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF627Q7L945 461 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF575Q86XF7 245 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 NBPF5PQ86XG9 351 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-204ENST00000399489 RAB11FIP4Q86YS3 637 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 TAGAPQ8N103 731 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF276Q8N554 614 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 TRIML1Q8N9V2 468 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 GAB3Q8WWW8 586 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 SNX27Q96L92 541 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF512Q96ME7 567 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-204ENST00000399489 TRAPPC9Q96Q05 1148 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 MNTQ99583 582 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 CHST8Q9H2A9 424 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 TP63Q9H3D4 680 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-204ENST00000399489 MTG2Q9H4K7 406 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 NOD2Q9HC29 1040 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 C5AR2Q9P296 337 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 MORF4L1Q9UBU8 362 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 USP18Q9UMW8 372 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms