RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SERAC1Q96JX3 654 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 COPG2Q9UBF2 871 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 ZNF510Q9Y2H8 683 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 DGKBQ9Y6T7 804 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 PDLIM1O00151 329 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 ANGPT2O15123 496 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 TNNC2P02585 160 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 STIP1P31948 543 aaKnown RBP9.59□□□□□ -0.87
COL28A1-201ENST00000399429 RPL22P35268 128 aaKnown RBP9.59□□□□□ -0.87
COL28A1-201ENST00000399429 CACNB3P54284 484 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 WASHC5Q12768 1159 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 TRIM60Q495X7 471 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 BNIPLQ7Z465 357 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 CENPSQ8N2Z9 138 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 ZNF280CQ8ND82 737 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 BPIFB6Q8NFQ5 453 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 HTRA1Q92743 480 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 PLEKHA8Q96JA3 519 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 OSBPL11Q9BXB4 747 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 NOL11Q9H8H0 719 aaKnown RBP9.59□□□□□ -0.87
COL28A1-201ENST00000399429 GPRC5CQ9NQ84 441 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 ABCB10Q9NRK6 738 aa9.59□□□□□ -0.87
COL28A1-201ENST00000399429 ARHGAP23Q9P227 1491 aa9.59□□□□□ -0.88
COL28A1-201ENST00000399429 SPATA31D1Q6ZQQ2 1576 aa9.59□□□□□ -0.88
COL28A1-201ENST00000399429 MYBPC2Q14324 1141 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 SF3B3Q15393 1217 aaKnown RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 C1QTNF12Q5T7M4 302 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 SV2AQ7L0J3 742 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 CCDC60Q8IWA6 550 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 GPD1LQ8N335 351 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 EMC1Q8N766 993 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 SEMA4DQ92854 862 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 HAPLN3Q96S86 360 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 BCAS3Q9H6U6 928 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 TBCCD1Q9NVR7 557 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 DCDC2Q9UHG0 476 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 SH3PXD2BA1X283 911 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 HEATR9A2RTY3 570 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 K7ERI5 159 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 CHEK2O96017 543 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 CYP1A1P04798 512 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 GSTT2P0CG29 244 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 GSTT2BP0CG30 244 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 S100A5P33763 92 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 ARL4AP40617 200 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 FSTL1Q12841 308 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 MTERF2Q49AM1 385 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 AGKQ53H12 422 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 EFHC2Q5JST6 749 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 GLRA4Q5JXX5 417 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 FNBP1LQ5T0N5 605 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 GPAT2Q6NUI2 795 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 ADGRD1Q6QNK2 874 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 TDRPQ86YL5 185 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 KATNAL2Q8IYT4 538 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 AHI1Q8N157 1196 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 PARP8Q8N3A8 854 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 C12orf50Q8NA57 414 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 CCDC17Q96LX7 622 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 HEXIM2Q96MH2 286 aaKnown RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 FRMD8Q9BZ67 464 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 UNKQ9C0B0 810 aaKnown RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 RAD21L1Q9H4I0 556 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 HEMK1Q9Y5R4 338 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 CACNA1FO60840 1977 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 TBX3O15119 743 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 ITM2AO43736 263 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 H6PDO95479 791 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 DLDP09622 509 aaKnown RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 CYP19A1P11511 503 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 EPHA3P29320 983 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 NKX1-1Q15270 411 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 DGKDQ16760 1214 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 SAPCD2Q86UD0 394 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 DHRSXQ8N5I4 330 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 DLG3Q92796 817 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 RNF34Q969K3 372 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 FAM84AQ96KN4 292 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 MBOAT7Q96N66 472 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 FAIMQ9NVQ4 179 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 CCDC167Q9P0B6 97 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 KLHL8Q9P2G9 620 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-201ENST00000399429 MOSPD1Q9UJG1 213 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 SLC39A10Q9ULF5 831 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 PLLPQ9Y342 182 aa9.58□□□□□ -0.88
COL28A1-201ENST00000399429 XRN1Q8IZH2 1706 aaKnown RBP9.57□□□□□ -0.88
COL28A1-201ENST00000399429 MED7O43513 233 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 TTKP33981 857 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 QARSP47897 775 aaKnown RBP9.57□□□□□ -0.88
COL28A1-201ENST00000399429 BCAP31P51572 246 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 RELAQ04206 551 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 PRKD1Q15139 912 aaPredicted RBP9.57□□□□□ -0.88
COL28A1-201ENST00000399429 PGS1Q32NB8 556 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 ANKRD22Q5VYY1 191 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 FOXR2Q6PJQ5 311 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 GLIS1Q8NBF1 620 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 PSMA8Q8TAA3 256 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 SKA1Q96BD8 255 aa9.57□□□□□ -0.88
COL28A1-201ENST00000399429 DEPDC7Q96QD5 511 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms