RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 CCSER2Q9H7U1 834 aa9.26□□□□□ -0.93
CAPN3-208ENST00000397204 ZDHHC4Q9NPG8 344 aa9.26□□□□□ -0.93
CAPN3-208ENST00000397204 FKBPLQ9UIM3 349 aa9.26□□□□□ -0.93
CAPN3-208ENST00000397204 HCN2Q9UL51 889 aa9.26□□□□□ -0.93
CAPN3-208ENST00000397204 UBE4BO95155 1302 aa9.26□□□□□ -0.93
CAPN3-208ENST00000397204 OBSL1O75147 1896 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 IGHV1OR15-9A0A0B4J2B8 117 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 SPAARA0A1B0GVQ0 90 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 PVALEFA0A1B0GWK0 134 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 A0A1W2PQF6 199 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 GFRA2O00451 464 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 SPTLC2O15270 562 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 TLR5O60602 858 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 EXOC3O60645 756 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 RPN1P04843 607 aaKnown RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 CD59P13987 128 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 HOXB2P14652 356 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 ATP5C1P36542 298 aaKnown RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 SMCPP49901 116 aaPredicted RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 EHHADHQ08426 723 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 STK38Q15208 465 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 KNOP1Q1ED39 458 aaKnown RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 BMT2Q1RMZ1 405 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 SGSM1Q2NKQ1 1148 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 TMEM259Q4ZIN3 620 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 ZNF667Q5HYK9 610 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 SYCP2LQ5T4T6 812 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 LRSAM1Q6UWE0 723 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 UNC13DQ70J99 1090 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 FAM35AQ86V20 835 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 CHPFQ8IZ52 775 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 FUKQ8N0W3 1084 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 GOLGA5Q8TBA6 731 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 PARD3BQ8TEW8 1205 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 IPO4Q8TEX9 1081 aaKnown RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 TMEM174Q8WUU8 243 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 GTPBP2Q9BX10 602 aaKnown RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 KLF16Q9BXK1 252 aaPredicted RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 CSNK1G1Q9HCP0 422 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 CD248Q9HCU0 757 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 TLR8Q9NR97 1041 aaKnown RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 DNAAF2Q9NVR5 837 aaKnown RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 MARK1Q9P0L2 795 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 GMIPQ9P107 970 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 CALCOCO1Q9P1Z2 691 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 SUSD2Q9UGT4 822 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 LSM7Q9UK45 103 aaKnown RBP9.25□□□□□ -0.93
CAPN3-208ENST00000397204 MTMR6Q9Y217 621 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 ACACAQ13085 2346 aa9.25□□□□□ -0.93
CAPN3-208ENST00000397204 MYOFQ9NZM1 2061 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 TRIM24O15164 1050 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 CACNG3O60359 315 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 GREM1O60565 184 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 CUTAO60888 179 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 NDUFS2O75306 463 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 C4BPAP04003 597 aaKnown RBP9.24□□□□□ -0.93
CAPN3-208ENST00000397204 P4HA1P13674 534 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 GNSP15586 552 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 WASP42768 502 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 PLA2G4AP47712 749 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 ZNF132P52740 706 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 GOLGA8FQ08AF8 430 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 GOLGA8DPQ0D2H9 430 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 BIRC3Q13489 604 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 NCOA4Q13772 614 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 TRIP6Q15654 476 aaKnown RBP9.24□□□□□ -0.93
CAPN3-208ENST00000397204 WDR45BQ5MNZ6 344 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 KLHDC10Q6PID8 442 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 RAB44Q7Z6P3 723 aaPredicted RBP9.24□□□□□ -0.93
CAPN3-208ENST00000397204 ACOT1Q86TX2 421 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 UNC93AQ86WB7 457 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 MIB1Q86YT6 1006 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 SLC41A1Q8IVJ1 513 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 NELFCDQ8IXH7 590 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 ZNF276Q8N554 614 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 MINDY1Q8N5J2 469 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 DEFB119Q8N690 84 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 TRIML1Q8N9V2 468 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 ZCCHC14Q8WYQ9 949 aaKnown RBP9.24□□□□□ -0.93
CAPN3-208ENST00000397204 TAF4BQ92750 862 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 WBP2Q969T9 261 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 DHX58Q96C10 678 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 ZNF396Q96N95 335 aaPredicted RBP9.24□□□□□ -0.93
CAPN3-208ENST00000397204 SMOQ99835 787 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 GABRG3Q99928 467 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 BBS2Q9BXC9 721 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 ZDHHC5Q9C0B5 715 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 SMYD3Q9H7B4 428 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 MAGEF1Q9HAY2 307 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 CYLDQ9NQC7 956 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 DNAJC17Q9NVM6 304 aaKnown RBP9.24□□□□□ -0.93
CAPN3-208ENST00000397204 DMAC2Q9NW81 257 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 TFIP11Q9UBB9 837 aaKnown RBP9.24□□□□□ -0.93
CAPN3-208ENST00000397204 FBXO10Q9UK96 956 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 KLK13Q9UKR3 277 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 SCML2Q9UQR0 700 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 NFE2L3Q9Y4A8 694 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 PCDHB9Q9Y5E1 797 aa9.24□□□□□ -0.93
CAPN3-208ENST00000397204 ASXL3Q9C0F0 2248 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms