RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ST13P50502 369 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 CENPCQ03188 943 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 STK4Q13043 487 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 NFYCQ13952 458 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 PDK2Q15119 407 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 ZNHIT3Q15649 155 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 PKN2Q16513 984 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 ALG11Q2TAA5 492 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 NBPF12Q5TAG4 269 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 PTAR1Q7Z6K3 402 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 KLHL23Q8NBE8 558 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 EDEM1Q92611 657 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 C7orf25Q9BPX7 421 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 GLIS2Q9BZE0 524 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 GANQ9H2C0 597 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 AP4E1Q9UPM8 1137 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 MTO1Q9Y2Z2 717 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 PARNO95453 639 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 HLA-DQA2P01906 255 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 CATP04040 527 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 HIST1H2ABP04908 130 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 BNC1Q01954 994 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 METTL7BQ6UX53 244 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TPGS1Q6ZTW0 290 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 HIST3H2AQ7L7L0 130 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TLK2Q86UE8 772 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 ELOA2Q8IYF1 753 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 HIST1H2ACQ93077 130 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 COL26A1Q96A83 441 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 GMCL1Q96IK5 515 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 CPB2Q96IY4 423 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 PANX3Q96QZ0 392 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 SIKE1Q9BRV8 207 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 DIABLOQ9NR28 239 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 IARS2Q9NSE4 1012 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 LRRC4BQ9NT99 713 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D23Q9NUY8 699 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 ELOVL2Q9NXB9 296 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 ARHGAP28Q9P2N2 729 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 ZNF112Q9UJU3 913 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 GTF3C4Q9UKN8 822 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 OR10H1Q9Y4A9 318 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 PPP2R3BQ9Y5P8 575 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 ZMYM4Q5VZL5 1548 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 XPO1O14980 1071 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 CSDE1O75534 798 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 MPOP05164 745 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 TMEM253P0C7T8 217 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ZNF286BP0CG31 522 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CLK2P49760 499 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 NUP107P57740 925 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 NAB2Q15742 525 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CCNG2Q16589 344 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 TTC33Q6PID6 262 aaPredicted RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 FBXO38Q6PIJ6 1188 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 FIBCD1Q8N539 461 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CCDC33Q8N5R6 958 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 UXS1Q8NBZ7 420 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 MAGEC3Q8TD91 643 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CXorf40AQ8TE69 158 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ERP27Q96DN0 273 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 RMND5BQ96G75 393 aaPredicted RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 SH3GL2Q99962 352 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 GPATCH2LQ9NWQ4 482 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 POLG2Q9UHN1 485 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 C1QTNF3-AMACRE9PGA6 284 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 FOXN1O15353 648 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 GLRA3O75311 464 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 VPS4BO75351 444 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 RTN3O95197 1032 aaPredicted RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 SLC2A4P14672 509 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 TYMPP19971 482 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 RAD23AP54725 363 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 NME5P56597 212 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CXCL9Q07325 125 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 USP41Q3LFD5 358 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ARMC4Q5T2S8 1044 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 JAMLQ86YT9 394 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ADSSL1Q8N142 457 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 UTP15Q8TED0 518 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 CNPY3Q9BT09 278 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 DPY30Q9C005 99 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 SNX12Q9UMY4 172 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 SNX6Q9UNH7 406 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 TPBGLP0DKB5 382 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ITGA8P53708 1063 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.38□□□□□ -1.23
UPF2-203ENST00000397053 SPIDRQ14159 915 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CSHL1Q14406 222 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 PTGISQ16647 500 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CHPFQ8IZ52 775 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 LGI2Q8N0V4 545 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 GFM2Q969S9 779 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 SERPINB11Q96P15 392 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 TMEM237Q96Q45 408 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 PRMT1Q99873 361 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 SLITRK2Q9H156 845 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 SERHL2Q9H4I8 314 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 GPRC5CQ9NQ84 441 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 SERHLQ9NQF3 203 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms