RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 FAM167AQ96KS9 214 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 MMP19Q99542 508 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 EBNA1BP2Q99848 306 aaKnown RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 NGRNQ9NPE2 291 aaKnown RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 PAPOLBQ9NRJ5 636 aaKnown RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 TSPAN16Q9UKR8 245 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 C2CD2Q9Y426 696 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 SDR42E2A6NKP2 422 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 KIF3CO14782 793 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 IL18RAPO95256 599 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 MYCNP04198 464 aaPredicted RBP13.15□□□□□ -0.3
SHMT1-205ENST00000395684 SERPINA6P08185 405 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 STAG3L1P0CL83 205 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 NDST1P52848 882 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 MBTD1Q05BQ5 628 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 STX3Q13277 289 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 ZRSR2Q15696 482 aaKnown RBP13.15□□□□□ -0.3
SHMT1-205ENST00000395684 TRMT5Q32P41 509 aaKnown RBP13.15□□□□□ -0.3
SHMT1-205ENST00000395684 C11orf91Q3C1V1 193 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 UNC5BQ8IZJ1 945 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 SLC25A41Q8N5S1 370 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 MCUQ8NE86 351 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 GSDMBQ8TAX9 411 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 APBB2Q92870 758 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 LRRC39Q96DD0 335 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 GPR20Q99678 358 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 MAGEB5Q9BZ81 275 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 TNFSF13BQ9Y275 285 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 ANK1P16157 1881 aa13.15□□□□□ -0.3
SHMT1-205ENST00000395684 CPOXP36551 454 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 CLCN3P51790 818 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 CDK18Q07002 472 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 SLC10A2Q12908 348 aaPredicted RBP13.15□□□□□ -0.31
SHMT1-205ENST00000395684 NBPF20Q3BBV1 942 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 PPP6R3Q5H9R7 873 aaPredicted RBP13.15□□□□□ -0.31
SHMT1-205ENST00000395684 SLC30A9Q6PML9 568 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 RAB3IL1Q8TBN0 382 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 FAM172AQ8WUF8 416 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 KHSRPQ92945 711 aaKnown RBP eCLIP13.15□□□□□ -0.31
SHMT1-205ENST00000395684 ZNF778Q96MU6 729 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 TTC1Q99614 292 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 DDX50Q9BQ39 737 aaKnown RBP13.15□□□□□ -0.31
SHMT1-205ENST00000395684 SNRNP25Q9BV90 132 aaKnown RBP13.15□□□□□ -0.31
SHMT1-205ENST00000395684 MAF1Q9H063 256 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 R3HDMLQ9H3Y0 253 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 GBA2Q9HCG7 927 aaPredicted RBP13.15□□□□□ -0.31
SHMT1-205ENST00000395684 DDX43Q9NXZ2 648 aaKnown RBP13.15□□□□□ -0.31
SHMT1-205ENST00000395684 BTBD7Q9P203 1132 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 ANGPTL2Q9UKU9 493 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 PPM1HQ9ULR3 514 aa13.15□□□□□ -0.31
SHMT1-205ENST00000395684 MAGEA13PA6NCF6 341 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 MEI4A8MW99 385 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 BIRC5O15392 142 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 ITM2AO43736 263 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 GAS2O43903 313 aaKnown RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 LYPLA1O75608 230 aaPredicted RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 GMPSP49915 693 aaPredicted RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 PAPOLAP51003 745 aaKnown RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 GBE1Q04446 702 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 WASHC5Q12768 1159 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 TUBB3Q13509 450 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 DNAL1Q4LDG9 190 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 PMF1Q6P1K2 205 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 C16orf46Q6P387 395 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 LCLAT1Q6UWP7 414 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 HPDLQ96IR7 371 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 CYP3A43Q9HB55 503 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 THAP1Q9NVV9 213 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 SLC17A6Q9P2U8 582 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 NR2E3Q9Y5X4 410 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 A0A088AWK7 358 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 CIB2O75838 187 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 USP1O94782 785 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 GSTA2P09210 222 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 C6orf222P0C671 652 aaPredicted RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 TGFB3P10600 412 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 TFE3P19532 575 aaPredicted RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 ADORA2AP29274 412 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 FASTKD1Q53R41 847 aaKnown RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 C1orf146Q5VVC0 180 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 IZUMO2Q6UXV1 221 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 ATG14Q6ZNE5 492 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 CCNJLQ8IV13 435 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 KLRG1Q96E93 195 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 APOL6Q9BWW8 343 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 C1orf21Q9H246 121 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 VRTNQ9H8Y1 702 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 XAB2Q9HCS7 855 aaKnown RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 MOCS1Q9NZB8 636 aa13.14□□□□□ -0.31
SHMT1-205ENST00000395684 BARX2Q9UMQ3 279 aaPredicted RBP13.14□□□□□ -0.31
SHMT1-205ENST00000395684 BAG2O95816 211 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 UBTFL6P0CB48 400 aaPredicted RBP13.13□□□□□ -0.31
SHMT1-205ENST00000395684 SLC25A3Q00325 362 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 TREML2Q5T2D2 321 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 EFCAB12Q6NXP0 572 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 OLFML1Q6UWY5 402 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 ARCQ7LC44 396 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 SCUBE3Q8IX30 993 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 GSTCDQ8NEC7 633 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 DEPDC1BQ8WUY9 529 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms