RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 BAG1Q99933 345 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 ADGRG1Q9Y653 693 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 EPN1Q9Y6I3 576 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 DOCK6Q96HP0 2047 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 C2orf78A6NCI8 922 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 PI4K2BG5E9Z4 385 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 FTLP02792 175 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 CD19P15391 556 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 CYLC1P35663 651 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 ATP5C1P36542 298 aaKnown RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 SLC1A1P43005 524 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 NUBP1P53384 320 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 GALCP54803 685 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 STARD6P59095 220 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 C12orf76Q8N812 135 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 MRPS31Q92665 395 aaKnown RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 TBCBQ99426 244 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 CNPY3Q9BT09 278 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 SLC2A11Q9BYW1 496 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 LRRC4Q9HBW1 653 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 ADAM22Q9P0K1 906 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 SLC27A6Q9Y2P4 619 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 I6L893 689 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 SLC2A3P11169 496 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 SKILP12757 684 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 HDAC4P56524 1084 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 COG7P83436 770 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 PIGHQ14442 188 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 FAM133BQ5BKY9 247 aaKnown RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 TJAP1Q5JTD0 557 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 CHST9Q7L1S5 443 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 TXLNBQ8N3L3 684 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 TDRD5Q8NAT2 981 aaKnown RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 KDM1BQ8NB78 822 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 CPA5Q8WXQ8 436 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 CORO1BQ9BR76 489 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 TDP1Q9NUW8 608 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 TBC1D14Q9P2M4 693 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 FZD10Q9ULW2 581 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 PCDHA13Q9Y5I0 950 aa7.32□□□□□ -1.24
LIMA1-202ENST00000394943 TNRC6BQ9UPQ9 1833 aaKnown RBP7.32□□□□□ -1.24
LIMA1-202ENST00000394943 C3orf70A6NLC5 250 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-202ENST00000394943 LEFTY2O00292 366 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SPATA31D3P0C874 917 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 RRM1P23921 792 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 RDXP35241 583 aaKnown RBP7.31□□□□□ -1.24
LIMA1-202ENST00000394943 PTPN21Q16825 1174 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 ARHGAP29Q52LW3 1261 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 MMS22LQ6ZRQ5 1243 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SPATA31D4Q6ZUB0 917 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 TAC4Q86UU9 113 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SIX6OS1Q8N1H7 587 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 ARHGEF26Q96DR7 871 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 PLA2G2FQ9BZM2 168 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.31□□□□□ -1.24
LIMA1-202ENST00000394943 EFR3BQ9Y2G0 817 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 STARD13Q9Y3M8 1113 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 CKAP5Q14008 2032 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 CES2O00748 559 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 TLR5O60602 858 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 PROSCO94903 275 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 PRAMEF12O95522 483 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 CISD3P0C7P0 127 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 IL9P15248 144 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 GPD1P21695 349 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 FLT3P36888 993 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 NTHL1P78549 312 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 GFPT1Q06210 699 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SYPL2Q5VXT5 272 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 NUGGCQ68CJ6 796 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 NADSYN1Q6IA69 706 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 NLRP14Q86W24 1093 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 UNC45BQ8IWX7 931 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SCUBE3Q8IX30 993 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 KLHDC8BQ8IXV7 354 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 JOSD2Q8TAC2 188 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 FAM131CQ96AQ9 280 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 P2RY11Q96G91 374 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 GCNAQ96QF7 691 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SLC22A12Q96S37 553 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 THAP2Q9H0W7 228 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 CCSER2Q9H7U1 834 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 CD248Q9HCU0 757 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 HPS4Q9NQG7 708 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 WNT16Q9UBV4 365 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 ADAMTS1Q9UHI8 967 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 A0A1W2PRU2 124 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 KLKB1P03952 638 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SRFP11831 508 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 MAGEA9P43362 315 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 KRT83P78385 493 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 DPYSL2Q16555 572 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 GPR158Q5T848 1215 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SDHAF4Q5VUM1 108 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 FYB2Q5VWT5 728 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 TMC5Q6UXY8 1006 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 SCN4BQ8IWT1 228 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 DEFB106AQ8N104 65 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF557Q8N988 423 aaPredicted RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms