RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SNX25Q9H3E2 840 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 TXLNGQ9NUQ3 528 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 RHBDL2Q9NX52 303 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 TCRBV7S3A2A0A539 114 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 DPYSL4O14531 572 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 NQO1P15559 274 aaKnown RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 CCDC142Q17RM4 750 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 C4orf22Q6V702 233 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 UNC93AQ86WB7 457 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 LRRC52Q8N7C0 313 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 DENND1AQ8TEH3 1009 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 LENG1Q96BZ8 264 aaPredicted RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 CFAP36Q96G28 342 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 RSRC1Q96IZ7 334 aaKnown RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 MRPL45Q9BRJ2 306 aaKnown RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 ZFYVE28Q9HCC9 887 aa10□□□□□ -0.81
COL6A3-204ENST00000392003 FBXO9Q9UK97 447 aaPredicted RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 ZMYND8Q9ULU4 1186 aaPredicted RBP10□□□□□ -0.81
COL6A3-204ENST00000392003 TM9SF1O15321 606 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 TIMM44O43615 452 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 ATP5HO75947 161 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 ZFXP17010 805 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 CYP3A5P20815 502 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 NCALDP61601 193 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SFSWAPQ12872 951 aaKnown RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 BNIP1Q12981 228 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 PTK7Q13308 1070 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 EFTUD2Q15029 972 aaKnown RBP eCLIP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SLC1A5Q15758 541 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 FXNQ16595 210 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 CCDC14Q49A88 953 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 PMF1Q6P1K2 205 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 MAMDC4Q6UXC1 1216 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SCUBE3Q8IX30 993 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SLC43A3Q8NBI5 491 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 LRRC37BQ96QE4 947 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 TSC22D3Q99576 134 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 FAM167BQ9BTA0 163 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SNRNP25Q9BV90 132 aaKnown RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 PRKAG3Q9UGI9 489 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 UBQLN1Q9UMX0 589 aaKnown RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 ENDOD1O94919 500 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 RGS2P41220 211 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 TRPC1P48995 793 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 BEX3Q00994 111 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 RGS9BPQ6ZS82 235 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 NANOGNBQ7Z5D8 188 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 PLD5Q8N7P1 536 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 ZNF560Q96MR9 790 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SLC4A5Q9BY07 1137 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 DHX35Q9H5Z1 703 aaKnown RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SPC25Q9HBM1 224 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 PCDH18Q9HCL0 1135 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 WDR91A4D1P6 747 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 KBTBD13C9JR72 458 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 BOLA2-SMG1P6H3BVE0 249 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 GOLGA8RI6L899 631 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 IGF2BP3O00425 579 aaKnown RBP eCLIP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 LPXNO60711 386 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 EDF1O60869 148 aaKnown RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SMIM24O75264 130 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 CD4P01730 458 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 C6orf222P0C671 652 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SMIM10L2AP0DMW4 78 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SMIM10L2BP0DMW5 78 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 ADORA2BP29275 332 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 NSUN2Q08J23 767 aaKnown RBP eCLIP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 SYCP2LQ5T4T6 812 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 FITM2Q8N6M3 262 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 STK32AQ8WU08 396 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 ZNF75CPQ92670 426 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 RAB3IPQ96QF0 476 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 FERMT1Q9BQL6 677 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 ZNF670Q9BS34 389 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 PIN4Q9Y237 131 aaKnown RBP9.99□□□□□ -0.81
COL6A3-204ENST00000392003 KAT6AQ92794 2004 aa9.99□□□□□ -0.81
COL6A3-204ENST00000392003 M0QZ92 97 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 TYROBPO43914 113 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 MGRN1O60291 552 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 RBL1P28749 1068 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ACADSBP45954 432 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 CPT1AP50416 773 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 BCAT1P54687 386 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 BST2Q10589 180 aaKnown RBP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 MFSD10Q14728 455 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 GALNTL6Q49A17 601 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 GLRA4Q5JXX5 417 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 RGMBQ6NW40 437 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 DNAJB3Q8WWF6 145 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 PIWIL1Q96J94 861 aaKnown RBP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 SNX27Q96L92 541 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 RMDN2Q96LZ7 410 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 SRPK1Q96SB4 655 aaKnown RBP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 KLF6Q99612 283 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 GALNT8Q9NY28 637 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 STK38LQ9Y2H1 464 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 MDM4O15151 490 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 KRT37O76014 449 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ATP6V1G2O95670 118 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 APRTP07741 180 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms