RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NETO1Q8TDF5 533 aa22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 IPO9Q96P70 1041 aaKnown RBP22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 POLMQ9NP87 494 aaPredicted RBP22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 RWDD2AQ9UIY3 292 aa22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 SLC12A8A0AV02 714 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 RHOBTB1O94844 696 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 HMBSP08397 361 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 CISD3P0C7P0 127 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 CORO1AP31146 461 aaKnown RBP22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 CHKAP35790 457 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 ZNF132P52740 706 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 ELF2Q15723 593 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 C11orf74Q86VG3 221 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 SIX6OS1Q8N1H7 587 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 RBBP8NLQ8NC74 664 aaPredicted RBP22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 OLIG1Q8TAK6 271 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 SLC35F5Q8WV83 523 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 P2RY11Q96G91 374 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 KREMEN1Q96MU8 473 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 RTKNQ9BST9 563 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 CNGB3Q9NQW8 809 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 OLA1Q9NTK5 396 aaKnown RBP22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 FBXO10Q9UK96 956 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 INVSQ9Y283 1065 aa22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 MYO18AQ92614 2054 aaKnown RBP22.73■■□□□ 1.23
CCDC28B-201ENST00000373602 DMXL1Q9Y485 3027 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 YJEFN3A6XGL0 299 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 E7ENQ6 273 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 PENKP01210 267 aaPredicted RBP22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 ZNF806P0C7X5 589 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 BRD2P25440 801 aaKnown RBP22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 DGKGP49619 791 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 PLA2G2CQ5R387 149 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 BSPRYQ5W0U4 402 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 TOGARAM2Q6ZUX3 1019 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 PLD4Q96BZ4 506 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 MED15Q96RN5 788 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 INTS2Q9H0H0 1204 aaKnown RBP22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 PLK2Q9NYY3 685 aa22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 AGO1Q9UL18 857 aaKnown RBP22.72■■□□□ 1.23
CCDC28B-201ENST00000373602 CACNA1AO00555 2505 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 LOC105378220A0A1B0GUY1 285 aaPredicted RBP22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 PRRT4C9JH25 899 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 M0QYV0 167 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 GABBR2O75899 941 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 LCP1P13796 627 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 GBP1P32455 592 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 DAOAP59103 153 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 TRIP4Q15650 581 aaPredicted RBP22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 FYB2Q5VWT5 728 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 EGFLAMQ63HQ2 1017 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 PMF1Q6P1K2 205 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 DENND1CQ8IV53 801 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 FMNL3Q8IVF7 1028 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 CPXM2Q8N436 756 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 BHMTQ93088 406 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 ABCC13Q9NSE7 274 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 CNTN6Q9UQ52 1028 aa22.71■■□□□ 1.23
CCDC28B-201ENST00000373602 SLC30A4O14863 429 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 CALCAP01258 141 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 NTSR1P30989 418 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 MPLP40238 635 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 RGS7P49802 495 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 CCDC6Q16204 474 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 PMS2CLQ68D20 193 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 FAM217AQ8IXS0 508 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 RNF139Q8WU17 664 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 HMGB4Q8WW32 186 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 EDEM1Q92611 657 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 HSFY1Q96LI6 401 aa22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 HBS1LQ9Y450 684 aaKnown RBP22.7■■□□□ 1.22
CCDC28B-201ENST00000373602 TCRBV21S2A2A0A5A6 115 aa22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 GDF9O60383 454 aa22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 BCKDHBP21953 392 aa22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 SF3A2Q15428 464 aaKnown RBP22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 MLKLQ8NB16 471 aa22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 IRGQQ8WZA9 623 aa22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 ACOX2Q99424 681 aa22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 BCCIPQ9P287 314 aaKnown RBP eCLIP22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 SLC27A6Q9Y2P4 619 aa22.69■■□□□ 1.22
CCDC28B-201ENST00000373602 BCLAF3A2AJT9 711 aaKnown RBP22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 HOXB2P14652 356 aa22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 P2RY2P41231 377 aa22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 ABCA7Q8IZY2 2146 aa22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 C12orf50Q8NA57 414 aaPredicted RBP22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 GABRG3Q99928 467 aa22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 CLSTN2Q9H4D0 955 aa22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 UBE2TQ9NPD8 197 aaPredicted RBP22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 VPS45Q9NRW7 570 aa22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 SFMBT1Q9UHJ3 866 aa22.68■■□□□ 1.22
CCDC28B-201ENST00000373602 A0A1W2PQF6 199 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 MED19A0JLT2 244 aaPredicted RBP22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 CYBBP04839 570 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 WASP42768 502 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 HARS2P49590 506 aaKnown RBP22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 MFAP3P55082 362 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 CREB5Q02930 508 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 MAP7D1Q3KQU3 841 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 AASDHQ4L235 1098 aaPredicted RBP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms