RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 BARX2Q9UMQ3 279 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-203ENST00000372407 LRCH1Q9Y2L9 728 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 KRT87PA6NCN2 255 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 F5H5T6 163 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 UBDO15205 165 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 CXCL8P10145 99 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 SHMT1P34896 483 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 CSHL1Q14406 222 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 FBXO47Q5MNV8 452 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 BBS2Q9BXC9 721 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 GANQ9H2C0 597 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 VANGL2Q9ULK5 521 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 PNMA8BQ9ULN7 279 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 SIK3Q9Y2K2 1263 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 FRMPD4Q14CM0 1322 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ADGRA3Q8IWK6 1321 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 A0A087WZ62 844 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 FAM86B1E9PN63 330 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 STK25O00506 426 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 FAM86B2P0C5J1 330 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 TPBGLP0DKB5 382 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 IL1R1P14778 569 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 HPCAP84074 193 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 TBL3Q12788 808 aaKnown RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ATP6AP1LQ52LC2 224 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ZPBP2Q6X784 338 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 TSEN2Q8NCE0 465 aaKnown RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 FDXACB1Q9BRP7 624 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 RBM22Q9NW64 420 aaKnown RBP eCLIP11.74□□□□□ -0.533e-6■■■■□ 22.7
PTPRF-203ENST00000372407 CLCA2Q9UQC9 943 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 LTBP4Q8N2S1 1624 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 C17orf102A2RUQ5 167 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 KBTBD13C9JR72 458 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 PDE5AO76074 875 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 DDHD2O94830 711 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ASS1P00966 412 aaKnown RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 GSNP06396 782 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 FCGR1AP12314 374 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 POLD3Q15054 466 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 OASLQ15646 514 aaKnown RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 NFE2Q16621 373 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ACBD5Q5T8D3 534 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 N4BP2L1Q5TBK1 243 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ARHGEF19Q8IW93 802 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 TDRD5Q8NAT2 981 aaKnown RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ETNPPLQ8TBG4 499 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 FBXO32Q969P5 355 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 COLEC11Q9BWP8 271 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 CLPBQ9H078 707 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ASB7Q9H672 318 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 DNAJC18Q9H819 358 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 PPP2R3BQ9Y5P8 575 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 AKAP12Q02952 1782 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 MZF1P28698 734 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 LHX1P48742 406 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 USP50Q70EL3 339 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ILDR2Q71H61 639 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 NIPA1Q7RTP0 329 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ERO1BQ86YB8 467 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 NLGN2Q8NFZ4 835 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 APOPT1Q96IL0 206 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 ZFYVE19Q96K21 471 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 SRPK1Q96SB4 655 aaKnown RBP11.74□□□□□ -0.53
PTPRF-203ENST00000372407 BTBD10Q9BSF8 475 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 RMND5AQ9H871 391 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 GIMAP4Q9NUV9 329 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 TSPAN16Q9UKR8 245 aa11.74□□□□□ -0.53
PTPRF-203ENST00000372407 GPR182O15218 404 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 TOMM70O94826 608 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 CRTAMO95727 393 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 RAP1GAPP47736 663 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 GCLCP48506 637 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-203ENST00000372407 SLC34A1Q06495 639 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 LAMTOR4Q0VGL1 99 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 CDH17Q12864 832 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 PKN2Q16513 984 aaKnown RBP11.73□□□□□ -0.53
PTPRF-203ENST00000372407 GALNTL6Q49A17 601 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 ERMARDQ5T6L9 678 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 SLC30A10Q6XR72 485 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 KCNK18Q7Z418 384 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 SLC22A9Q8IVM8 553 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 PPP2R3CQ969Q6 453 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 FICDQ9BVA6 458 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 MTIF3Q9H2K0 278 aaKnown RBP11.73□□□□□ -0.53
PTPRF-203ENST00000372407 CTNNAL1Q9UBT7 734 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 THP07101 528 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 CD151P48509 253 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 OTOAQ7RTW8 1153 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 FAM163AQ96GL9 167 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-203ENST00000372407 KCNQ5Q9NR82 932 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 GPRC5DQ9NZD1 345 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 DNPEPQ9ULA0 475 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 LTN1O94822 1766 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 CYTH3O43739 400 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 ATP9AO75110 1047 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 GLP2RO95838 553 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 VTNP04004 478 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 ITGALP20701 1170 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 MAPK1P28482 360 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 TKTL1P51854 596 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms