RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 RNF135Q8IUD6 432 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 CCDC60Q8IWA6 550 aaPredicted RBP11.98□□□□□ -0.49
USF1-201ENST00000368019 TRIM42Q8IWZ5 723 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 SLC35B2Q8TB61 432 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 MZB1Q8WU39 189 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 POF1BQ8WVV4 589 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 TMEM40Q8WWA1 233 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 FAM136AQ96C01 138 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 NSL1Q96IY1 281 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 BTBD10Q9BSF8 475 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 TRIM55Q9BYV6 548 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 KCNH6Q9H252 994 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 NKX1-2Q9UD57 310 aaPredicted RBP11.98□□□□□ -0.49
USF1-201ENST00000368019 ZNF212Q9UDV6 495 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 ZDBF2Q9HCK1 2354 aa11.98□□□□□ -0.49
USF1-201ENST00000368019 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 hCG_1818297A0A087WSY0 165 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 DENND3A2RUS2 1198 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 GOLGA8IPA6NC78 632 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 GOLGA8JA6NMD2 632 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 C9IYK1 514 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 F8W8V4 182 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 MAGEC1O60732 1142 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 LDHAP00338 332 aaKnown RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 PECAM1P16284 738 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 EPHB2P29323 1055 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 CDH5P33151 784 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 PTDSS1P48651 473 aaKnown RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 ARSEP51690 589 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 RAP1GDS1P52306 607 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 AP3M2P53677 418 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 SH3BGRP55822 239 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 FAM189BP81408 668 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 CDK16Q00536 496 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 SLC18A2Q05940 514 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 CUL2Q13617 745 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 RBBP5Q15291 538 aaKnown RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 TBCCQ15814 346 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 DBN1Q16643 649 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 KCTD19Q17RG1 926 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 XKR9Q5GH70 373 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 ZNF484Q5JVG2 852 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 FAM160B1Q5W0V3 765 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 SPOCD1Q6ZMY3 1216 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 PPIL6Q8IXY8 311 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 ZNF276Q8N554 614 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 BANPQ8N9N5 519 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 SMRP1Q8NCR6 262 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 POMGNT1Q8WZA1 660 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 PPP2R3CQ969Q6 453 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 SKA1Q96BD8 255 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 CCDC127Q96BQ5 260 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 PTCD3Q96EY7 689 aaKnown RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 FRMD8Q9BZ67 464 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 FAM192AQ9GZU8 254 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 DENND2DQ9H6A0 471 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 VPS37BQ9H9H4 285 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 ACP6Q9NPH0 428 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 RGS18Q9NS28 235 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.97□□□□□ -0.49
USF1-201ENST00000368019 CHORDC1Q9UHD1 332 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 MUTYHQ9UIF7 546 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 RABGEF1Q9UJ41 708 aa11.97□□□□□ -0.49
USF1-201ENST00000368019 MAFBQ9Y5Q3 323 aaPredicted RBP11.97□□□□□ -0.49
USF1-201ENST00000368019 MYO10Q9HD67 2058 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 CLUHO75153 1309 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 IQANK1A0A1B0GTG1 560 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 TCRBV5S1A1TA0A578 114 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 ANKRD33BA6NCL7 494 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 TMEM191CA6NGB0 347 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 SIGLEC16A6NMB1 481 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 LOC730098B7Z3J9 87 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 POC1B-GALNT4F8VUJ3 575 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 DDX39AO00148 427 aaKnown RBP11.96□□□□□ -0.49
USF1-201ENST00000368019 SPAG7O75391 227 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 DGAT1O75907 488 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 CSPG5O95196 566 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 C22orf31O95567 290 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 HLA-DRAP01903 254 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 KRT1P04264 644 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 TMEM191BP0C7N4 346 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 GM2AP17900 193 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 MMP8P22894 467 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 RPA3P35244 121 aaPredicted RBP11.96□□□□□ -0.49
USF1-201ENST00000368019 NRIP1P48552 1158 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 VPS41P49754 854 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 NDUFV1P49821 464 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 ZNF132P52740 706 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 SARNPP82979 210 aaKnown RBP11.96□□□□□ -0.49
USF1-201ENST00000368019 ROR2Q01974 943 aaKnown RBP11.96□□□□□ -0.49
USF1-201ENST00000368019 UBE3AQ05086 875 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 SF3A3Q12874 501 aaKnown RBP eCLIP11.96□□□□□ -0.493e-6■■■■□ 23.4
USF1-201ENST00000368019 GPS1Q13098 491 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 DSC3Q14574 896 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 CBX2Q14781 532 aaPredicted RBP11.96□□□□□ -0.49
USF1-201ENST00000368019 SEPT7Q16181 437 aaKnown RBP11.96□□□□□ -0.49
USF1-201ENST00000368019 TAZQ16635 292 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 HIF1AQ16665 826 aa11.96□□□□□ -0.49
USF1-201ENST00000368019 TAF1BQ53T94 588 aaPredicted RBP11.96□□□□□ -0.49
USF1-201ENST00000368019 TFDP3Q5H9I0 405 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms