RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 CNTN1Q12860 1018 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 OVGP1Q12889 678 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 BFSP2Q13515 415 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 TJAP1Q5JTD0 557 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 ZNF280DQ6N043 979 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 RFWD2Q8NHY2 731 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 MRPS31Q92665 395 aaKnown RBP12.08□□□□□ -0.48
COL9A1-202ENST00000357250 MKL1Q969V6 931 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 THUMPD3Q9BV44 507 aaKnown RBP12.08□□□□□ -0.48
COL9A1-202ENST00000357250 SEMA4AQ9H3S1 761 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 FBXO44Q9H4M3 255 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 SAR1AQ9NR31 198 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 TRPM5Q9NZQ8 1165 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 HAO1Q9UJM8 370 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 ACTL7BQ9Y614 415 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 MRC1P22897 1456 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 KRT87PA6NCN2 255 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 GLP2RO95838 553 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 LRG1P02750 347 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 BMP6P22004 513 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 PSMA3P25788 255 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 HUNKP57058 714 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 RRP1BQ14684 758 aaKnown RBP12.08□□□□□ -0.48
COL9A1-202ENST00000357250 ZCWPW2Q504Y3 356 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 SDE2Q6IQ49 451 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 CENPTQ96BT3 561 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 HES6Q96HZ4 224 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 APOPT1Q96IL0 206 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 HIC2Q96JB3 615 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 MTMR9Q96QG7 549 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 TMEM120AQ9BXJ8 343 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 CTNNAL1Q9UBT7 734 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 POLG2Q9UHN1 485 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 MROH7Q68CQ1 1323 aa12.08□□□□□ -0.48
COL9A1-202ENST00000357250 CARNS1A5YM72 827 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 DDX3XO00571 662 aaKnown RBP eCLIP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 PSMC3P17980 439 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 PAX3P23760 479 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 CPA2P48052 419 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 MRPL28Q13084 256 aaKnown RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 MAD2L1Q13257 205 aaPredicted RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 TAF2Q6P1X5 1199 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 MICU2Q8IYU8 434 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 RSPH1Q8WYR4 309 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 VPS33AQ96AX1 596 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 ACSF2Q96CM8 615 aaPredicted RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 SPATC1LQ9H0A9 340 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 DDX28Q9NUL7 540 aaKnown RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 THAP1Q9NVV9 213 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 VANGL2Q9ULK5 521 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 KIF1AQ12756 1690 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 LTN1O94822 1766 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 ASS1P00966 412 aaKnown RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 ALADP13716 330 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 PGAM1P18669 254 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 CCR1P32246 355 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 MRPS15P82914 257 aaKnown RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 COLGALT1Q8NBJ5 622 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 TMEM106CQ9BVX2 250 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 TMEM134Q9H6X4 195 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 IARS2Q9NSE4 1012 aaKnown RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 IMPAD1Q9NX62 359 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 SORCS3Q9UPU3 1222 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 H3BRB1 525 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 APOC4-APOC2K7ER74 178 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 APOC2P02655 101 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 TFRCP02786 760 aaKnown RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 TCN1P20061 433 aaPredicted RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 CD151P48509 253 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 PRIM2P49643 509 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 RAP1GDS1P52306 607 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 RAD23AP54725 363 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 MAML3Q96JK9 1138 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 TUT1Q9H6E5 874 aaKnown RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 GGA2Q9UJY4 613 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 ITM2BQ9Y287 266 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 AP3M1Q9Y2T2 418 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 PRG3Q9Y2Y8 225 aaPredicted RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 SAC3D1A6NKF1 404 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 PLSCR1O15162 318 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 JCHAINP01591 159 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 SLC12A3P55017 1021 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 MTM1Q13496 603 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 SCARA3Q6AZY7 606 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 SLC27A1Q6PCB7 646 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 SLC9A9Q8IVB4 645 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 POP1Q99575 1024 aaKnown RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 GPAMQ9HCL2 828 aa12.07□□□□□ -0.48
COL9A1-202ENST00000357250 MED1Q15648 1581 aaPredicted RBP12.07□□□□□ -0.48
COL9A1-202ENST00000357250 F8W810 466 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 VPS4BO75351 444 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 DDHD2O94830 711 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 THPOP40225 353 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 DEPDC1Q5TB30 811 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 PDPK2PQ6A1A2 396 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 KYAT3Q6YP21 454 aaKnown RBP12.06□□□□□ -0.48
COL9A1-202ENST00000357250 FAM131BQ86XD5 332 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 HERC6Q8IVU3 1022 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 SGF29Q96ES7 293 aa12.06□□□□□ -0.48
COL9A1-202ENST00000357250 ABHD8Q96I13 439 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms