RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NET1Q7Z628 596 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 CENPLQ8N0S6 344 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 GLIS3Q8NEA6 775 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ZNF606Q8WXB4 792 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 TAAR1Q96RJ0 339 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ENTPD3O75355 529 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 GSNP06396 782 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 CPB1P15086 417 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 ANPEPP15144 967 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 MMP13P45452 471 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 SPATA2LQ8IUW3 424 aaPredicted RBP20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 BAP1Q92560 729 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 NSMCE2Q96MF7 247 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 RIOX1Q9H6W3 641 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 PARVBQ9HBI1 364 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 VDRP11473 427 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 KBTBD2Q8IY47 623 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 MIER2Q8N344 545 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 COLGALT1Q8NBJ5 622 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 GORASP1Q9BQQ3 440 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 GPAMQ9HCL2 828 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 FBXO28Q9NVF7 368 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 TAS2R14Q9NYV8 317 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 AP4E1Q9UPM8 1137 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 PTGES3LE9PB15 166 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 Q4G0T1 1027 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 STK32CQ86UX6 486 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.06■□□□□ 0.83e-9■■■■■ 348.1
CCDC88B-202ENST00000356786 SNX31Q8N9S9 440 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 PIWIL2Q8TC59 973 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 SLC10A4Q96EP9 437 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 RNF112Q9ULX5 631 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 A0A096LPK6 155 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 TSC22D2O75157 780 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 DDHD2O94830 711 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 CD4P01730 458 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 TMEM119Q4V9L6 283 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 ZRANB3Q5FWF4 1079 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 ATG16L2Q8NAA4 619 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 SH3TC2Q8TF17 1288 aa20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 KCTD14Q9BQ13 255 aaPredicted RBP20.06■□□□□ 0.8
CCDC88B-202ENST00000356786 GEMP55040 296 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 MYL6P60660 151 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 BFSP2Q13515 415 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 FASTKQ14296 549 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CCDC153Q494R4 210 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CBWD6Q4V339 395 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CBWD3Q5JTY5 395 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CBWD5Q5RIA9 395 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CACHD1Q5VU97 1274 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 DHDDSQ86SQ9 333 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 ZNF398Q8TD17 642 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 OSCP1Q8WVF1 389 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CRAMP1Q96RY5 1269 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 MMP19Q99542 508 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CCDC167Q9P0B6 97 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 NCF1BA6NI72 391 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 NCF1CA8MVU1 366 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CNOT3O75175 753 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 TOMM70O94826 608 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 NCF1P14598 390 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 SKIV2L2P42285 1042 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 TWF1Q12792 350 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 TKFCQ3LXA3 575 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 C16orf46Q6P387 395 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 ACOT1Q86TX2 421 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 NDNQ99608 321 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 TRPC7Q9HCX4 862 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 PNMA8BQ9ULN7 279 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 JCHAINP01591 159 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 ACAP1Q15027 740 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 NFIL3Q16649 462 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CYP51A1Q16850 503 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 BLOC1S5Q8TDH9 187 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 RORBQ92753 470 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 PHF21BQ96EK2 531 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 CGRRF1Q99675 332 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 PIH1D1Q9NWS0 290 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 AAR2Q9Y312 384 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 FAM95CA0A1B0GW59 222 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 TCRBV5S4A2TA0A5A2 114 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 AKT1P31749 480 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 NNMTP40261 264 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 RIPK1Q13546 671 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 AARS2Q5JTZ9 985 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 ERO1BQ86YB8 467 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 TSPAN14Q8NG11 270 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 AVENQ9NQS1 362 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 PACSIN3Q9UKS6 424 aa20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 RPL26L1Q9UNX3 145 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-202ENST00000356786 ATXN2Q99700 1313 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 DYTNA2CJ06 578 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 KLRC4O43908 158 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 ZNF682O95780 498 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 DDX5P17844 614 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 VAC14Q08AM6 782 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 STRIP1Q5VSL9 837 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 SLC30A10Q6XR72 485 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 C6orf62Q9GZU0 229 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 STK39Q9UEW8 545 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms