RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 UNC45BQ8IWX7 931 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 ANKLE1Q8NAG6 615 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 FUBP3Q96I24 572 aaKnown RBP eCLIP13.91□□□□□ -0.18
HMGB1-202ENST00000339872 RRN3Q9NYV6 651 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 CWC15Q9P013 229 aaKnown RBP13.91□□□□□ -0.18
HMGB1-202ENST00000339872 PCDHB5Q9Y5E4 795 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 OR6C75A6NL08 312 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 H7C0C1 242 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 DNALI1O14645 258 aaPredicted RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 TNFRSF10BO14763 440 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 CPB1P15086 417 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 ATP5OP48047 213 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 MRPL58Q14197 206 aaKnown RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 EFHC2Q5JST6 749 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 SPDYCQ5MJ68 293 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 RTP2Q5QGT7 225 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 CEP85LQ5SZL2 805 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 SDHAF4Q5VUM1 108 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 LRIG3Q6UXM1 1119 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 FAM71DQ8N9W8 422 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 STKLD1Q8NE28 680 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 BCL7CQ8WUZ0 217 aaPredicted RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 PABPC3Q9H361 631 aaKnown RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 WDR6Q9NNW5 1121 aaKnown RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 PRDM5Q9NQX1 630 aaPredicted RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 DNAJC17Q9NVM6 304 aaKnown RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.9□□□□□ -0.185e-9■■■■■ 39.6
HMGB1-202ENST00000339872 HSPA8P11142 646 aaKnown RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 GPR15P49685 360 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 GYS2P54840 703 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 HIBCHQ6NVY1 386 aaPredicted RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 VWCEQ96DN2 955 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 PGAP3Q96FM1 320 aaPredicted RBP13.9□□□□□ -0.18
HMGB1-202ENST00000339872 SLC9A7Q96T83 725 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 TRIM62Q9BVG3 475 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 ADAM7Q9H2U9 754 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 SEMA4AQ9H3S1 761 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 AAASQ9NRG9 546 aa13.9□□□□□ -0.18
HMGB1-202ENST00000339872 GOLGA8KD6RF30 607 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 H0YGN5 161 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 TRIM66O15016 1216 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 CREB3O43889 395 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 RARGP13631 454 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 ZFXP17010 805 aaPredicted RBP13.89□□□□□ -0.19
HMGB1-202ENST00000339872 RFC2P35250 354 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 ALDH7A1P49419 539 aaKnown RBP13.89□□□□□ -0.19
HMGB1-202ENST00000339872 YWHAGP61981 247 aaKnown RBP eCLIP13.89□□□□□ -0.19
HMGB1-202ENST00000339872 DDR2Q16832 855 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 DENND2CQ68D51 928 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 VSTM1Q6UX27 236 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 TAC4Q86UU9 113 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 TTC9BQ8N6N2 239 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 ATAD1Q8NBU5 361 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 RNF139Q8WU17 664 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 PWWP2AQ96N64 755 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 EPB41L4BQ9H329 900 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 RCOR3Q9P2K3 495 aaPredicted RBP13.89□□□□□ -0.19
HMGB1-202ENST00000339872 TPX2Q9ULW0 747 aaKnown RBP13.89□□□□□ -0.19
HMGB1-202ENST00000339872 NFS1Q9Y697 457 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 COL4A6Q14031 1691 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 PLXNA3P51805 1871 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 H3BRJ5 948 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 DGKIO75912 1065 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 AMPD1P23109 780 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 ADRA1BP35368 520 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 NRLP54845 237 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 AIF1P55008 147 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 GBE1Q04446 702 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 ZNF844Q08AG5 666 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 UBAP2Q5T6F2 1119 aaKnown RBP13.89□□□□□ -0.19
HMGB1-202ENST00000339872 BTBD8Q5XKL5 378 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 TAS1R1Q7RTX1 841 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 DQX1Q8TE96 717 aaKnown RBP13.89□□□□□ -0.19
HMGB1-202ENST00000339872 NTAN1Q96AB6 310 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 ARL8AQ96BM9 186 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 TTPALQ9BTX7 342 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 TSPYL1Q9H0U9 437 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 ANLNQ9NQW6 1124 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 FBXW11Q9UKB1 542 aa13.89□□□□□ -0.19
HMGB1-202ENST00000339872 GOLGA6L10A6NI86 522 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 F9P00740 461 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 RPL22P35268 128 aaKnown RBP13.88□□□□□ -0.19
HMGB1-202ENST00000339872 IFFO1Q0D2I5 559 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 ARL13BQ3SXY8 428 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 TTMPQ5BVD1 217 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 NCBP2-AS2Q69YL0 99 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 FAM117BQ6P1L5 589 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 PRSS55Q6UWB4 352 aaPredicted RBP13.88□□□□□ -0.19
HMGB1-202ENST00000339872 RSPO2Q6UXX9 243 aaPredicted RBP13.88□□□□□ -0.19
HMGB1-202ENST00000339872 NUP93Q8N1F7 819 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 TAB3Q8N5C8 712 aaPredicted RBP13.88□□□□□ -0.19
HMGB1-202ENST00000339872 C8orf48Q96LL4 319 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 CDC42EP4Q9H3Q1 356 aaKnown RBP13.88□□□□□ -0.19
HMGB1-202ENST00000339872 ARHGEF4Q9NR80 690 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 ABCC13Q9NSE7 274 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 ETNK2Q9NVF9 386 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 MFHAS1Q9Y4C4 1052 aa13.88□□□□□ -0.19
HMGB1-202ENST00000339872 GOLGA6CA6NDK9 693 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 H7C4K7 107 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 EEF2KO00418 725 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms