RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CCDC85CA6NKD9 419 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 ARHGEF15O94989 841 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 DNAJB2P25686 324 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 L1CAMP32004 1257 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 GBP1P32455 592 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 ALDH1A3P47895 512 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 PPP3CCP48454 512 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 TUBP50607 506 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 CDH6P55285 790 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 SEMA3BQ13214 749 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 TFDP2Q14188 446 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 NAA30Q147X3 362 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 VEPH1Q14D04 833 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 SCYL2Q6P3W7 929 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 KLHDC10Q6PID8 442 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 SND1Q7KZF4 910 aaKnown RBP eCLIP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 TMC7Q7Z402 723 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 MAATS1Q7Z4T9 603 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 CCDC185Q8N715 623 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 TTC13Q8NBP0 860 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 POF1BQ8WVV4 589 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 HSPH1Q92598 858 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 NKD2Q969F2 451 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 ACSF2Q96CM8 615 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 RNF157Q96PX1 679 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 TGS1Q96RS0 853 aaKnown RBP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 KRT12Q99456 494 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 TCF25Q9BQ70 676 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 C17orf80Q9BSJ5 609 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 DDX47Q9H0S4 455 aaKnown RBP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 CYP4F11Q9HBI6 524 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 TLR9Q9NR96 1032 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 OSER1Q9NX31 292 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 ARHGEF38Q9NXL2 777 aa15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 V9GYY5 206 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 FAM187AA6NFU0 413 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 TGM5O43548 720 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 CXCL14O95715 111 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 CD48P09326 243 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 DNAJB1P25685 340 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 TNFRSF8P28908 595 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 ELF1P32519 619 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 HTR7P34969 479 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 HCAR3P49019 387 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 ERVFC1P60507 584 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 NRG1Q02297 640 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 ADCY2Q08462 1091 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 MTA1Q13330 715 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 MTMR3Q13615 1198 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 CA9Q16790 459 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 ARL13BQ3SXY8 428 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 ZC3H12AQ5D1E8 599 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 EFHC2Q5JST6 749 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 SLC9A4Q6AI14 798 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 FAM109BQ6ICB4 259 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 EIF1ADQ8N9N8 165 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 CCDC26Q8TAB7 109 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 RNF139Q8WU17 664 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 SEC14L1Q92503 715 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 ANKRD7Q92527 254 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 PSMG2Q969U7 264 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 SLC39A13Q96H72 371 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 KCTD15Q96SI1 283 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 LRRC1Q9BTT6 524 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 DCLK3Q9C098 648 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 OSBPL2Q9H1P3 480 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 STIM2Q9P246 746 aa15.5■□□□□ 0.07
CCDC88C-202ENST00000334448 I6L893 689 aaPredicted RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 APOC4-APOC2K7ER74 178 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 PRRG1O14668 218 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 RAD51CO43502 376 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 IGLV3-27P01718 113 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 APOC2P02655 101 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 CA3P07451 260 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 SLC2A3P11169 496 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 RARGP13631 454 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 KRT10P13645 584 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 MCM3P25205 808 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 COILP38432 576 aaPredicted RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 EPHB3P54753 998 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 RING1Q06587 406 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 IFRD2Q12894 506 aaPredicted RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 NME3Q13232 169 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 CAMK1Q14012 370 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 KRT81Q14533 505 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 ZFYVE27Q5T4F4 411 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 ACBD5Q5T8D3 534 aaPredicted RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 TTC27Q6P3X3 843 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 CCDC149Q6ZUS6 474 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 TADA2BQ86TJ2 420 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 ITIH5Q86UX2 942 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 SLC35B2Q8TB61 432 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 GPR152Q8TDT2 470 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 GIPC2Q8TF65 315 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 HDAC7Q8WUI4 952 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 CASP10Q92851 521 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 MAGOHBQ96A72 148 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 CSPG4P5Q96PW8 444 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms