RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 RNF43Q68DV7 783 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 NCBP2-AS2Q69YL0 99 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 FAM228AQ86W67 206 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 ZNF75CPQ92670 426 aaPredicted RBP15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 ALG13Q9NP73 1137 aaKnown RBP15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 DTLQ9NZJ0 730 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 TTLL3Q9Y4R7 772 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 CXorf49A8MYA2 514 aaPredicted RBP15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 ZNF487B1APH4 448 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 CYB561D2O14569 222 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 XPO1O14980 1071 aaKnown RBP15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 SCNN1AP37088 669 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 TAF1CQ15572 869 aaPredicted RBP15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 FSCN1Q16658 493 aaKnown RBP15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 PAQR9Q6ZVX9 377 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 ARCQ7LC44 396 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 SUGP1Q8IWZ8 645 aaKnown RBP15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 CTAGE3PQ8IX95 158 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 PARP9Q8IXQ6 854 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 VPS52Q8N1B4 723 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 DUSP16Q9BY84 665 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 CYLDQ9NQC7 956 aa15.4■□□□□ 0.06
CLCNKA-201ENST00000331433 ZNF638Q14966 1978 aaKnown RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 IQANK1A0A1B0GTG1 560 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 C1QAP02745 245 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 RARBP10826 455 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 WARSP23381 471 aaKnown RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 GRIA1P42261 906 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 AFF1P51825 1210 aaKnown RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 MNAT1P51948 309 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 HUNKP57058 714 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 KCNJ2P63252 427 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 ELF3P78545 371 aaPredicted RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 OTUD1Q5VV17 481 aaPredicted RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 KIAA0319Q5VV43 1072 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 CST9Q5W186 159 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 ZNF534Q76KX8 674 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 PPM1NQ8N819 430 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 GBP7Q8N8V2 638 aaPredicted RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 QKIQ96PU8 341 aaKnown RBP eCLIP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 LGMNQ99538 433 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 HNRNPABQ99729 332 aaKnown RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 USP3Q9Y6I4 520 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 MYADML2A6NDP7 307 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 SPAG6O75602 509 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 ZFXP17010 805 aaPredicted RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 MAGEA6P43360 314 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 PURAQ00577 322 aaKnown RBP15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 SLC25A52Q3SY17 297 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 MDH1BQ5I0G3 518 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 EFHC1Q5JVL4 640 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 STRADAQ7RTN6 431 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 OTOAQ7RTW8 1153 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 MPP5Q8N3R9 675 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 TOP6BLQ8N6T0 577 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 FZD10Q9ULW2 581 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 TRIM33Q9UPN9 1127 aa15.39■□□□□ 0.05
CLCNKA-201ENST00000331433 LPXNO60711 386 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 GCATO75600 419 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 PYGBP11216 843 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 VAV1P15498 845 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 NPR3P17342 541 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 PTPN1P18031 435 aaKnown RBP15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 NR2C2P49116 596 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 HEATR6Q6AI08 1181 aaKnown RBP15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 DENND5BQ6ZUT9 1274 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 KIF2BQ8N4N8 673 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 ZNF276Q8N554 614 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 PPP1R10Q96QC0 940 aaKnown RBP15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 FRMD8Q9BZ67 464 aaPredicted RBP15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 RRAGCQ9HB90 399 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 CD248Q9HCU0 757 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 SMYD2Q9NRG4 433 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 MAD1L1Q9Y6D9 718 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 TM9SF1O15321 606 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 MFSD11O43934 449 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 UGT1A9O60656 530 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 ARL4AP40617 200 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 MRPS5P82675 430 aaKnown RBP15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 SYPL2Q5VXT5 272 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 CLEC20AQ6ZU45 233 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 HFE2Q6ZVN8 426 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 SLC26A11Q86WA9 606 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 PTPRN2Q92932 1015 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 ALKBH8Q96BT7 664 aaKnown RBP15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 MED10Q9BTT4 135 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 KATNAL1Q9BW62 490 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 MYLK2Q9H1R3 596 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 UGT1A7Q9HAW7 530 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 UGT1A10Q9HAW8 530 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 UGT1A8Q9HAW9 530 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 PNPLA8Q9NP80 782 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 ARHGEF4Q9NR80 690 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 GTF2IRD1Q9UHL9 959 aa15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 TIMM13Q9Y5L4 95 aaPredicted RBP15.38■□□□□ 0.05
CLCNKA-201ENST00000331433 C6orf222P0C671 652 aaPredicted RBP15.37■□□□□ 0.05
CLCNKA-201ENST00000331433 LRPAP1P30533 357 aa15.37■□□□□ 0.05
CLCNKA-201ENST00000331433 MLH1P40692 756 aa15.37■□□□□ 0.05
CLCNKA-201ENST00000331433 MAP3K7CLP57077 242 aa15.37■□□□□ 0.05
CLCNKA-201ENST00000331433 SLC8A3P57103 927 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms