RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 SHOC2Q9UQ13 582 aa12.9□□□□□ -0.34
RNF4-201ENST00000314289 SCN10AQ9Y5Y9 1956 aa12.9□□□□□ -0.34
RNF4-201ENST00000314289 A0A1W2PPM1 405 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 GOLGA8RI6L899 631 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 HGSO14964 777 aaPredicted RBP12.9□□□□□ -0.35
RNF4-201ENST00000314289 SEPT4O43236 478 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 CDH16O75309 829 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 NEBLO76041 1014 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 ZBED1O96006 694 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 MYCP01106 439 aaPredicted RBP12.9□□□□□ -0.35
RNF4-201ENST00000314289 AMHP03971 560 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 APRTP07741 180 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 CHRM1P11229 460 aaPredicted RBP12.9□□□□□ -0.35
RNF4-201ENST00000314289 NPR3P17342 541 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 TIGD5Q53EQ6 642 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 RSPH3Q86UC2 560 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 EDEM1Q92611 657 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 CCDC77Q9BR77 488 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 DUSP16Q9BY84 665 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 STMN4Q9H169 189 aaPredicted RBP12.9□□□□□ -0.35
RNF4-201ENST00000314289 C12orf65Q9H3J6 166 aaKnown RBP12.9□□□□□ -0.35
RNF4-201ENST00000314289 NRDE2Q9H7Z3 1164 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 MTMR10Q9NXD2 777 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.9□□□□□ -0.358e-7■■□□□ 12.8
RNF4-201ENST00000314289 TLL2Q9Y6L7 1015 aa12.9□□□□□ -0.35
RNF4-201ENST00000314289 M0QYT0 321 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 DPYSL4O14531 572 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 ALOX15BO15296 676 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 ADAMTS4O75173 837 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 DNAJC8O75937 253 aaPredicted RBP12.89□□□□□ -0.35
RNF4-201ENST00000314289 ITGB1P05556 798 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 USP17L7P0C7H9 530 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 SIX6OS1Q8N1H7 587 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 STKLD1Q8NE28 680 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 STK32AQ8WU08 396 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 THOC1Q96FV9 657 aaKnown RBP12.89□□□□□ -0.35
RNF4-201ENST00000314289 ADAM2Q99965 735 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 SLC24A3Q9HC58 644 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 SAMD15Q9P1V8 674 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 L3MBTL1Q9Y468 752 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 YJEFN3A6XGL0 299 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 E7ENQ6 273 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 MGRN1O60291 552 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 SKAP2O75563 359 aaPredicted RBP12.89□□□□□ -0.35
RNF4-201ENST00000314289 AP1G2O75843 785 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 ELK3P41970 407 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 ARL4CP56559 192 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 STAT4Q14765 748 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 PALM2Q8IXS6 379 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 TOP6BLQ8N6T0 577 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 FBF1Q8TES7 1133 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 TMEM209Q96SK2 561 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 LGMNQ99538 433 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 SYT15Q9BQS2 421 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 ULBP1Q9BZM6 244 aa12.89□□□□□ -0.35
RNF4-201ENST00000314289 TMEM88BA6NKF7 163 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 XPO1O14980 1071 aaKnown RBP12.88□□□□□ -0.35
RNF4-201ENST00000314289 WARSP23381 471 aaKnown RBP12.88□□□□□ -0.35
RNF4-201ENST00000314289 LRPAP1P30533 357 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 YWHAZP63104 245 aaKnown RBP12.88□□□□□ -0.35
RNF4-201ENST00000314289 PDK2Q15119 407 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 AGGF1Q8N302 714 aaeCLIP12.88□□□□□ -0.35
RNF4-201ENST00000314289 ZNF317Q96PQ6 595 aaPredicted RBP12.88□□□□□ -0.35
RNF4-201ENST00000314289 CSPG4P5Q96PW8 444 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 HNRNPABQ99729 332 aaKnown RBP12.88□□□□□ -0.35
RNF4-201ENST00000314289 TCP11X1B4DZS4 312 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 DESP17661 470 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 GRIA1P42261 906 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 MATKP42679 507 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 SLC8A3P57103 927 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 MRPS5P82675 430 aaKnown RBP12.88□□□□□ -0.35
RNF4-201ENST00000314289 KCNT2Q6UVM3 1135 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 PDIK1LQ8N165 341 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 SLC7A14Q8TBB6 771 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 SMOQ99835 787 aa12.88□□□□□ -0.35
RNF4-201ENST00000314289 C11orf84Q9BUA3 381 aaPredicted RBP12.88□□□□□ -0.35
RNF4-201ENST00000314289 CAPN9O14815 690 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 METTL18O95568 372 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 FAM200BP0CF97 657 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 SNX16P57768 344 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 YWHAGP61981 247 aaKnown RBP eCLIP12.87□□□□□ -0.35
RNF4-201ENST00000314289 OTUD1Q5VV17 481 aaPredicted RBP12.87□□□□□ -0.35
RNF4-201ENST00000314289 CROCCP2Q86T23 111 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 RELL1Q8IUW5 271 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 CFAP36Q96G28 342 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 ANLNQ9NQW6 1124 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 PIGVQ9NUD9 493 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 ABCF3Q9NUQ8 709 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 FGFR1OP2Q9NVK5 253 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 SNX10Q9Y5X0 201 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 NUP205Q92621 2012 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 GABRDO14764 452 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 MDM4O15151 490 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 PTPN9P43378 593 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 IRF5Q13568 498 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 SLC9A4Q6AI14 798 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 LIMS2Q7Z4I7 341 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 ZDHHC17Q8IUH5 632 aa12.87□□□□□ -0.35
RNF4-201ENST00000314289 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.87□□□□□ -0.35
RNF4-201ENST00000314289 ZMIZ2Q8NF64 920 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms