RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 BCAP31P51572 246 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 FASTKQ14296 549 aaKnown RBP14.24□□□□□ -0.13
CSPG4-201ENST00000308508 NR6A1Q15406 480 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 GSG1L2A8MUP6 293 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 EPHB2P29323 1055 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 RFX3P48380 749 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 EXOSC10Q01780 885 aaKnown RBP14.24□□□□□ -0.13
CSPG4-201ENST00000308508 TMEM132CQ8N3T6 1108 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 VMP1Q96GC9 406 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 AP3M1Q9Y2T2 418 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 MAGEB2O15479 319 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 ZNF671Q8TAW3 534 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 HPDLQ96IR7 371 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 TPD52L3Q96J77 140 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 MAGEB16A2A368 324 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 PLA2G6O60733 806 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 CRTAMO95727 393 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 LBPP18428 481 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 MSH3P20585 1137 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 AP1S2P56377 157 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ATP6V0D2Q8N8Y2 350 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 TMEM143Q96AN5 459 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ADPRHL2Q9NX46 363 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ATP10AO60312 1499 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 A0A0A6YYK5 440 aaPredicted RBP14.23□□□□□ -0.13
CSPG4-201ENST00000308508 PCNAP12004 261 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 SIX5Q8N196 739 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 PRAMEF22A3QJZ6 481 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 FSBPO95073 299 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 VCLP18206 1134 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 DSG3P32926 999 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 C8orf59Q8N0T1 100 aaPredicted RBP14.23□□□□□ -0.13
CSPG4-201ENST00000308508 SPPL2AQ8TCT8 520 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 SCUBE2Q9NQ36 999 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ING3Q9NXR8 418 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 C2CD2Q9Y426 696 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 SERPINE1P05121 402 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 SRP54P61011 504 aaKnown RBP14.23□□□□□ -0.13
CSPG4-201ENST00000308508 MFSD4BQ5TF39 518 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 FAM196AQ6ZSG2 479 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 STK32CQ86UX6 486 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ACTRT2Q8TDY3 377 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 RNF145Q96MT1 663 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 FBXO28Q9NVF7 368 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ANKRD6Q9Y2G4 727 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 CROCC2H7BZ55 1655 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 PNPLA4P41247 253 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ADHFE1Q8IWW8 467 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 SNX8Q9Y5X2 465 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 C15orf38-AP3S2A0A0A6YYH1 394 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 CCDC162PA2VCL2 907 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 GTF2E2P29084 291 aaKnown RBP14.23□□□□□ -0.13
CSPG4-201ENST00000308508 CACNB3P54284 484 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 EMC2Q15006 297 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ATF7IP2Q5U623 682 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 MFSD14CQ5VZR4 134 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 ARPINQ7Z6K5 226 aa14.23□□□□□ -0.13
CSPG4-201ENST00000308508 PRRG1O14668 218 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 MPP3Q13368 585 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 SCARA3Q6AZY7 606 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 APOBEC3FQ8IUX4 373 aaKnown RBP14.22□□□□□ -0.13
CSPG4-201ENST00000308508 SLITRK1Q96PX8 696 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 DGCR6LQ9BY27 220 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 RIBC2Q9H4K1 309 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 GPAMQ9HCL2 828 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 SPATA31E1Q6ZUB1 1445 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 CUL2Q13617 745 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 DCP1BQ8IZD4 617 aaKnown RBP14.22□□□□□ -0.13
CSPG4-201ENST00000308508 TMEM237Q96Q45 408 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 WDR41Q9HAD4 459 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 EURLQ9NYK6 297 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 TRPM5Q9NZQ8 1165 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 IRF1P10914 325 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 QPRTQ15274 297 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 DDI2Q5TDH0 399 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 UBA3Q8TBC4 463 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 NACC2Q96BF6 587 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 CCDC59Q9P031 241 aaKnown RBP14.22□□□□□ -0.13
CSPG4-201ENST00000308508 LIMD1Q9UGP4 676 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 LOC100506127A0A0U1RQW1 187 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 DALRD3Q5D0E6 543 aaKnown RBP14.22□□□□□ -0.13
CSPG4-201ENST00000308508 FAM81AQ8TBF8 368 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 MASTLQ96GX5 879 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 SEPT5Q99719 369 aaPredicted RBP14.22□□□□□ -0.13
CSPG4-201ENST00000308508 KATNAL1Q9BW62 490 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 PLGRKTQ9HBL7 147 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 GALNT8Q9NY28 637 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 COMMD3-BMI1R4GMX3 469 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 ACLYP53396 1101 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 INO80DQ53TQ3 878 aaPredicted RBP14.22□□□□□ -0.13
CSPG4-201ENST00000308508 SUSD4Q5VX71 490 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 LDHDQ86WU2 507 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 COMMD2Q86X83 199 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 NEDD1Q8NHV4 660 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 LNPEPQ9UIQ6 1025 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 MINPP1Q9UNW1 487 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 ROR2Q01974 943 aaKnown RBP14.22□□□□□ -0.13
CSPG4-201ENST00000308508 CCNIQ14094 377 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 ITFG1Q8TB96 612 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 AHSPQ9NZD4 102 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms