RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TREHO43280 583 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 LYPLA1O75608 230 aaPredicted RBP17.22■□□□□ 0.35
VPS54-201ENST00000272322 ENO1P06733 434 aaKnown RBP17.22■□□□□ 0.35
VPS54-201ENST00000272322 TKTP29401 623 aaKnown RBP17.22■□□□□ 0.35
VPS54-201ENST00000272322 ALDH18A1P54886 795 aaKnown RBP17.22■□□□□ 0.35
VPS54-201ENST00000272322 KCNJ11Q14654 390 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 BOLA3Q53S33 107 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 TWF2Q6IBS0 349 aaKnown RBP17.22■□□□□ 0.35
VPS54-201ENST00000272322 HFE2Q6ZVN8 426 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 CYP3A43Q9HB55 503 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 TXLNGQ9NUQ3 528 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 ZWINTO95229 277 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 HIC1Q14526 733 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 PPM1JQ5JR12 505 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 SYPL2Q5VXT5 272 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 MAMDC4Q6UXC1 1216 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 EXOC8Q8IYI6 725 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 FAM13CQ8NE31 585 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 EDEM1Q92611 657 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 SGIP1Q9BQI5 828 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 ZNF358Q9NW07 568 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 PAK5Q9P286 719 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 ITGA11Q9UKX5 1188 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 G3BP2Q9UN86 482 aaKnown RBP17.22■□□□□ 0.35
VPS54-201ENST00000272322 LTBP3Q9NS15 1303 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 SULT1E1P49888 294 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 DPY19L2Q6NUT2 758 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 CLNKQ7Z7G1 428 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 TDRPQ86YL5 185 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 NUP205Q92621 2012 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 AZIN2Q96A70 460 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 KCTD15Q96SI1 283 aaPredicted RBP17.22■□□□□ 0.35
VPS54-201ENST00000272322 RHOBTB2Q9BYZ6 727 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 SENP1Q9P0U3 644 aa17.22■□□□□ 0.35
VPS54-201ENST00000272322 PCK1P35558 622 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 PPIL2Q13356 520 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 PIGZQ86VD9 579 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 SLC35F5Q8WV83 523 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 SLC44A1Q8WWI5 657 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 GRAMD1AQ96CP6 724 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 SLC7A6OSQ96CW6 309 aaPredicted RBP17.21■□□□□ 0.35
VPS54-201ENST00000272322 CAPN9O14815 690 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 PDHA1P08559 390 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 MYL3P08590 195 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 YBX3P16989 372 aaKnown RBP eCLIP17.21■□□□□ 0.353e-7■■■□□ 17.3
VPS54-201ENST00000272322 CYP2B6P20813 491 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 MAP3K7CLP57077 242 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 RPL10AP62906 217 aaKnown RBP17.21■□□□□ 0.35
VPS54-201ENST00000272322 BST1Q10588 318 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 DSTYKQ6XUX3 929 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 BEST2Q8NFU1 509 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 FBXO27Q8NI29 283 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 LPPQ93052 612 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 CLPTM1LQ96KA5 538 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 KCNK16Q96T55 309 aa17.21■□□□□ 0.35
VPS54-201ENST00000272322 SLC15A5A6NIM6 579 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 M0QYT0 321 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 HAUS5O94927 633 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 ERVK-10P10266 1014 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 TPH1P17752 444 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 MGAT1P26572 445 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 ATICP31939 592 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 MXRA7P84157 204 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 FBXO47Q5MNV8 452 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 SLC26A11Q86WA9 606 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 NUDCD3Q8IVD9 361 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 NPLOC4Q8TAT6 608 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 PGBD4Q96DM1 585 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 GCOM2Q9BZD3 368 aaPredicted RBP17.2■□□□□ 0.34
VPS54-201ENST00000272322 NMUR2Q9GZQ4 415 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 NUDT5Q9UKK9 219 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 KPNA7A9QM74 516 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 ATP9BO43861 1147 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 DCTN3O75935 186 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 L1CAMP32004 1257 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 ACVR2BQ13705 512 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 ASRGL1Q7L266 308 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 PID1Q7Z2X4 250 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 SLC25A41Q8N5S1 370 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 EFCAB3Q8N7B9 438 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 PPTC7Q8NI37 304 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 USP33Q8TEY7 942 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 MZB1Q8WU39 189 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 MCUR1Q96AQ8 359 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 CSPG4P5Q96PW8 444 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 PLCD4Q9BRC7 762 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 C20orf27Q9GZN8 174 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 DTLQ9NZJ0 730 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 PSAT1Q9Y617 370 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 PARP14Q460N5 1801 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 SMIM28A0A1B0GU29 152 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 KRT37O76014 449 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 MMP3P08254 477 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 CES4AQ5XG92 561 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 WSCD1Q658N2 575 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 RSPH3Q86UC2 560 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 CXorf56Q9H5V9 222 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 POPDC2Q9HBU9 364 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 PAPPA2Q9BXP8 1791 aa17.2■□□□□ 0.34
VPS54-201ENST00000272322 GYG2O15488 501 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms