RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 UNKQ9C0B0 810 aaKnown RBP11.68□□□□□ -0.54
PTPN4-201ENST00000263708 TRIM10Q9UDY6 481 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 ENTPD4Q9Y227 616 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 ANKARQ7Z5J8 1434 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 SMYD1Q8NB12 490 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 EFCAB1Q9HAE3 211 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 TMEM114B3SHH9 223 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 COPZ1P61923 177 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 KPNB1Q14974 876 aaKnown RBP11.68□□□□□ -0.54
PTPN4-201ENST00000263708 PREPLQ4J6C6 727 aaPredicted RBP11.68□□□□□ -0.54
PTPN4-201ENST00000263708 CBWD3Q5JTY5 395 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 CBWD5Q5RIA9 395 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 DAW1Q8N136 415 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 PROX1Q92786 737 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 HACL1Q9UJ83 578 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 FAM98BQ52LJ0 330 aaKnown RBP11.68□□□□□ -0.54
PTPN4-201ENST00000263708 FAAH2Q6GMR7 532 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 ENGASEQ8NFI3 743 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 SLC9A6Q92581 669 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 PRRG4Q9BZD6 226 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 TNFSF13BQ9Y275 285 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 FCGRTP55899 365 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 PURAQ00577 322 aaKnown RBP11.68□□□□□ -0.54
PTPN4-201ENST00000263708 BOP1Q14137 746 aaKnown RBP11.68□□□□□ -0.54
PTPN4-201ENST00000263708 DEFB128Q7Z7B8 93 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 CNPY4Q8N129 248 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 EPB41L4BQ9H329 900 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 ZNF222Q9UK12 451 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 DCDC2CA8MYV0 355 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 RHOCP08134 193 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 GSTM5P46439 218 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 STXBP1P61764 594 aaKnown RBP11.68□□□□□ -0.54
PTPN4-201ENST00000263708 STRA8Q7Z7C7 330 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 QKIQ96PU8 341 aaKnown RBP eCLIP11.68□□□□□ -0.545e-7■■■■■ 54.8
PTPN4-201ENST00000263708 DPY30Q9C005 99 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 LY9Q9HBG7 655 aa11.68□□□□□ -0.54
PTPN4-201ENST00000263708 ZCCHC17Q9NP64 241 aaKnown RBP11.68□□□□□ -0.54
PTPN4-201ENST00000263708 TAF6P49848 677 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 XKR3Q5GH77 459 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 CAPN15O75808 1086 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 BCL10O95999 233 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 SPANXN2Q5MJ10 180 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 RIBC2Q9H4K1 309 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 NRDE2Q9H7Z3 1164 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 B3GAT3O94766 335 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 LARGE1O95461 756 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 PRG2P13727 222 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 HK2P52789 917 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 ITGA1P56199 1179 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 ATP2C1P98194 919 aaPredicted RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 TRAP1Q12931 704 aaKnown RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 OTUD3Q5T2D3 398 aaPredicted RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 NUDT12Q9BQG2 462 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 ZMYM5Q9UJ78 669 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 RAD54BQ9Y620 910 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 TBX3O15119 743 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 KLHL41O60662 606 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 MED26O95402 600 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 ATN1P54259 1190 aaPredicted RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 RAB2AP61019 212 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 LIN54Q6MZP7 749 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 SEMA4DQ92854 862 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 PSMD11O00231 422 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 PTPN3P26045 913 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 MTAPQ13126 283 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 AXIN2Q9Y2T1 843 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 ABCC10Q5T3U5 1492 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 CCDC154A6NI56 674 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 CELF2O95319 508 aaKnown RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 HLA-DRAP01903 254 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 THRAP10827 490 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 CLK3P49761 638 aaKnown RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 C4orf22Q6V702 233 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 SCUBE1Q8IWY4 988 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 SUGP1Q8IWZ8 645 aaKnown RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 GAL3ST3Q96A11 431 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 EFR3BQ9Y2G0 817 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 PTCH1Q13635 1447 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 PGM3O95394 542 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 DNAJC3Q13217 504 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 BAATQ14032 418 aaPredicted RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 SPIDRQ14159 915 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 RIPOR1Q6ZS17 1223 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 PTAR1Q7Z6K3 402 aaPredicted RBP11.67□□□□□ -0.54
PTPN4-201ENST00000263708 GPRC5AQ8NFJ5 357 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 MCOLN3Q8TDD5 553 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 BPIFA3Q9BQP9 254 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 REEP2Q9BRK0 252 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 CMTM6Q9NX76 183 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 STK36Q9NRP7 1315 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 GALCP54803 685 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 FICDQ9BVA6 458 aa11.67□□□□□ -0.54
PTPN4-201ENST00000263708 CPDO75976 1380 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 PNPLA4P41247 253 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 NEDD8Q15843 81 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 TMEM159Q96B96 161 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 APOL4Q9BPW4 351 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 KANSL1LA0AUZ9 987 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 LRIG3Q6UXM1 1119 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms