RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CHMP1BQ7LBR1 199 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 MTMR8Q96EF0 704 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 DCLK3Q9C098 648 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 TMEM51Q9NW97 253 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 CPS1P31327 1500 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 DNALI1O14645 258 aaPredicted RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 STRNO43815 780 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 IL1R1P14778 569 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 RENBPP51606 427 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 SLC16A1P53985 500 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 CYP4Z1Q86W10 505 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 CARNMT1Q8N4J0 409 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 DDHD1Q8NEL9 900 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 SYT15Q9BQS2 421 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 PRRG3Q9BZD7 231 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 GPRC5DQ9NZD1 345 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 CHD1O14646 1710 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 KRT6AP02538 564 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 KRT6BP04259 564 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 CHI3L1P36222 383 aaPredicted RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 KRT6CP48668 564 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 PLIN5Q00G26 463 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 NT5DC1Q5TFE4 455 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 HERC6Q8IVU3 1022 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 LZTR1Q8N653 840 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 TERB1Q8NA31 727 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 TDRD5Q8NAT2 981 aaKnown RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 CPB2Q96IY4 423 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 KIAA1683Q9H0B3 1180 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 ACTR8Q9H981 624 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 AVENQ9NQS1 362 aaPredicted RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 POLR1AO95602 1720 aaPredicted RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 TMEM114B3SHH9 223 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 E9PBE3 544 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 KLHL41O60662 606 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 NPM3O75607 178 aaKnown RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 PYGMP11217 842 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 BGNP21810 368 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 PGM5Q15124 567 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 EZH2Q15910 746 aaKnown RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 CCDC153Q494R4 210 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 NT5DC4Q86YG4 428 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 PPP1R10Q96QC0 940 aaKnown RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 FBXO44Q9H4M3 255 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 KANSL3Q9P2N6 904 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 TSPAN16Q9UKR8 245 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 TRHDEQ9UKU6 1024 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 DNAJB2P25686 324 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 NR2C2P49116 596 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 RAB27AP51159 221 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 PDPK2PQ6A1A2 396 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 KYQ8NBH2 561 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 SLC5A5Q92911 643 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 SLC35C1Q96A29 364 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 TCF7L2Q9NQB0 619 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 SATB2Q9UPW6 733 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 NR5A2O00482 541 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 RIPK2O43353 540 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 SERPINE1P05121 402 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 PSMC6P62333 389 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 YWHAZP63104 245 aaKnown RBP13.92□□□□□ -0.18
SF3A1-201ENST00000215793 PHKG1Q16816 387 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 TRIM16LQ309B1 348 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 ZBTB49Q6ZSB9 765 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 KAT2BQ92831 832 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 TATDN2Q93075 761 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 SPATC1LQ9H0A9 340 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 LRRC4BQ9NT99 713 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 SARSP49591 514 aaKnown RBP13.92□□□□□ -0.18
SF3A1-201ENST00000215793 EPHB3P54753 998 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 ACAP1Q15027 740 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 TRIP4Q15650 581 aaPredicted RBP13.92□□□□□ -0.18
SF3A1-201ENST00000215793 CCDC33Q8N5R6 958 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 ANKRD27Q96NW4 1050 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 OSMRQ99650 979 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 HPS4Q9NQG7 708 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 TLR8Q9NR97 1041 aaKnown RBP13.92□□□□□ -0.18
SF3A1-201ENST00000215793 DDX43Q9NXZ2 648 aaKnown RBP13.92□□□□□ -0.18
SF3A1-201ENST00000215793 PCDHA3Q9Y5H8 950 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 GNG14A0A1W2PPG7 69 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 DDHD2O94830 711 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 UBOX5O94941 541 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 PAEPP09466 180 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 INSRRP14616 1297 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 SOX6P35712 828 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 OAZ1P54368 228 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 BMPR2Q13873 1038 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 TAF2Q6P1X5 1199 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 TMPRSS6Q8IU80 811 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 FAM120BQ96EK7 910 aaKnown RBP13.92□□□□□ -0.18
SF3A1-201ENST00000215793 TSEN34Q9BSV6 310 aaKnown RBP13.92□□□□□ -0.18
SF3A1-201ENST00000215793 KLHL4Q9C0H6 718 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 VTI1BQ9UEU0 232 aa13.92□□□□□ -0.18
SF3A1-201ENST00000215793 ELK3P41970 407 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 NPY2RP49146 381 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 NR6A1Q15406 480 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 PKN2Q16513 984 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 PAN2Q504Q3 1202 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 AGKQ53H12 422 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 GRTP1Q5TC63 336 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms