RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 KAT5Q92993 513 aa10.82□□□□□ -0.68
SCN1A-222ENST00000642141 OTUB2Q96DC9 234 aa10.82□□□□□ -0.68
SCN1A-222ENST00000642141 P2RY11Q96G91 374 aa10.82□□□□□ -0.68
SCN1A-222ENST00000642141 DHTKD1Q96HY7 919 aaPredicted RBP10.82□□□□□ -0.68
SCN1A-222ENST00000642141 ACOX2Q99424 681 aa10.82□□□□□ -0.68
SCN1A-222ENST00000642141 BCCIPQ9P287 314 aaKnown RBP eCLIP10.82□□□□□ -0.68
SCN1A-222ENST00000642141 EBF1Q9UH73 591 aa10.82□□□□□ -0.68
SCN1A-222ENST00000642141 LSM7Q9UK45 103 aaKnown RBP10.82□□□□□ -0.68
SCN1A-222ENST00000642141 MYH10P35580 1976 aa10.82□□□□□ -0.68
SCN1A-222ENST00000642141 TCRBV21S2A2A0A5A6 115 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.81□□□□□ -0.68
SCN1A-222ENST00000642141 HOXC11O43248 304 aaPredicted RBP10.81□□□□□ -0.68
SCN1A-222ENST00000642141 MAP3K13O43283 966 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 LRP3O75074 770 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 STC2O76061 302 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 CHRM1P11229 460 aaPredicted RBP10.81□□□□□ -0.68
SCN1A-222ENST00000642141 LCP1P13796 627 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 MPLP40238 635 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 EIF2DP41214 584 aaKnown RBP10.81□□□□□ -0.68
SCN1A-222ENST00000642141 FMO5P49326 533 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 MCCD1P59942 119 aaPredicted RBP10.81□□□□□ -0.68
SCN1A-222ENST00000642141 YWHAGP61981 247 aaKnown RBP eCLIP10.81□□□□□ -0.68
SCN1A-222ENST00000642141 ELF2Q15723 593 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 CAMK4Q16566 473 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 COBLL1Q53SF7 1204 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 SGO2Q562F6 1265 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 EGFLAMQ63HQ2 1017 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 ARHGAP17Q68EM7 881 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 GRAMD4Q6IC98 578 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 TTI2Q6NXR4 508 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 ARMCX6Q7L4S7 300 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 RRAGAQ7L523 313 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 CREBRFQ8IUR6 639 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 DENND1CQ8IV53 801 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 ZNF513Q8N8E2 541 aaPredicted RBP10.81□□□□□ -0.68
SCN1A-222ENST00000642141 KIAA1958Q8N8K9 716 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 ANKRD52Q8NB46 1076 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 CCDC26Q8TAB7 109 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 EDEM1Q92611 657 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 ZC3H10Q96K80 434 aaKnown RBP10.81□□□□□ -0.68
SCN1A-222ENST00000642141 ULBP1Q9BZM6 244 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 TSPAN16Q9UKR8 245 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 HCN2Q9UL51 889 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 COQ4Q9Y3A0 265 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 PCDHB4Q9Y5E5 795 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 USP3Q9Y6I4 520 aa10.81□□□□□ -0.68
SCN1A-222ENST00000642141 A0A0A0MRY4 1105 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 SLC12A8A0AV02 714 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 WASH3PC4AMC7 463 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 PRRT4C9JH25 899 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 RNF225M0QZC1 329 aaPredicted RBP10.8□□□□□ -0.68
SCN1A-222ENST00000642141 ALDH1A2O94788 518 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 RHOBTB1O94844 696 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 EPN2O95208 641 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 ZBED1O96006 694 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 SDHBP21912 280 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 CORO1AP31146 461 aaKnown RBP10.8□□□□□ -0.68
SCN1A-222ENST00000642141 DHPSP49366 369 aaPredicted RBP10.8□□□□□ -0.68
SCN1A-222ENST00000642141 RGS7P49802 495 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 SLC8A3P57103 927 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 ADIGQ0VDE8 80 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 MORC3Q14149 939 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 EOGTQ5NDL2 527 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 TMEM270Q6UE05 265 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 TMEFF1Q8IYR6 380 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 PPM1KQ8N3J5 372 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 TTC39CQ8N584 583 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 TFAP2BQ92481 460 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 LOXL4Q96JB6 756 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 IPO9Q96P70 1041 aaKnown RBP10.8□□□□□ -0.68
SCN1A-222ENST00000642141 SLC6A17Q9H1V8 727 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 LRRC4Q9HBW1 653 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 METTL14Q9HCE5 456 aaKnown RBP10.8□□□□□ -0.68
SCN1A-222ENST00000642141 PNPLA8Q9NP80 782 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 MARCH2Q9P0N8 246 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 WDR35Q9P2L0 1181 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 HESX1Q9UBX0 185 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 RAD54BQ9Y620 910 aa10.8□□□□□ -0.68
SCN1A-222ENST00000642141 MYO16Q9Y6X6 1858 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 YJEFN3A6XGL0 299 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 PATE3B3GLJ2 98 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 E7ENQ6 273 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 SLC30A4O14863 429 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 TSPAN3O60637 253 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 CAVIN2O95810 425 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 ZNF806P0C7X5 589 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 BRD2P25440 801 aaKnown RBP10.79□□□□□ -0.68
SCN1A-222ENST00000642141 DGKGP49619 791 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 PSEN1P49768 467 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 RAB41Q5JT25 222 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 KIAA1211LQ6NV74 962 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 KLHDC10Q6PID8 442 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 Q6ZNB5 142 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 TADA2BQ86TJ2 420 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 RASSF3Q86WH2 238 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 ARHGEF19Q8IW93 802 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 CHPFQ8IZ52 775 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 TERB1Q8NA31 727 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 NETO1Q8TDF5 533 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms