RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 VSTM5A8MXK1 200 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 RRHO14718 337 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 RNF8O76064 485 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 S100BP04271 92 aaPredicted RBP4.99□□□□□ -1.61
CD44-239ENST00000639002 EIF4A1P60842 406 aaKnown RBP4.99□□□□□ -1.61
CD44-239ENST00000639002 ID2Q02363 134 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 SEMA5AQ13591 1074 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 UBE2Q1Q7Z7E8 422 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 ZDHHC17Q8IUH5 632 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.99□□□□□ -1.61
CD44-239ENST00000639002 TSR2Q969E8 191 aaKnown RBP4.99□□□□□ -1.61
CD44-239ENST00000639002 SNX22Q96L94 193 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 FAM227BQ96M60 508 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 EBF3Q9H4W6 596 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 SAP30LQ9HAJ7 183 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 AGO4Q9HCK5 861 aaKnown RBP4.99□□□□□ -1.61
CD44-239ENST00000639002 PI4KBQ9UBF8 816 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 HPSEQ9Y251 543 aa4.99□□□□□ -1.61
CD44-239ENST00000639002 FRMPD2Q68DX3 1309 aaPredicted RBP4.98□□□□□ -1.61
CD44-239ENST00000639002 A0A087WZ62 844 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 FAM193AP78312 1265 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 DNASE1L3Q13609 305 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 CLCA4Q14CN2 919 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 ST3GAL2Q16842 350 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 EARS2Q5JPH6 523 aaKnown RBP4.98□□□□□ -1.61
CD44-239ENST00000639002 TFAP2DQ7Z6R9 452 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 MYO1HQ8N1T3 1032 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 SUN3Q8TAQ9 357 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 HIC2Q96JB3 615 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 CAMK1GQ96NX5 476 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 TM2D2Q9BX73 214 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 TBC1D23Q9NUY8 699 aa4.98□□□□□ -1.61
CD44-239ENST00000639002 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.98□□□□□ -1.61
CD44-239ENST00000639002 MGEA5O60502 916 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 FGF2P09038 288 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 RHCEP18577 417 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 RBL1P28749 1068 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 GALNSP34059 522 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 RPS13P62277 151 aaKnown RBP4.97□□□□□ -1.61
CD44-239ENST00000639002 RHDQ02161 417 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 RAPGEF1Q13905 1077 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 ACOX1Q15067 660 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 CC2D1BQ5T0F9 858 aaKnown RBP4.97□□□□□ -1.61
CD44-239ENST00000639002 ANO7Q6IWH7 933 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 CRELD2Q6UXH1 353 aaPredicted RBP4.97□□□□□ -1.61
CD44-239ENST00000639002 C14orf80Q86SX3 495 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 FAM71DQ8N9W8 422 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 SMCR8Q8TEV9 937 aaPredicted RBP4.97□□□□□ -1.61
CD44-239ENST00000639002 WASF1Q92558 559 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 ZFYVE19Q96K21 471 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 GATA5Q9BWX5 397 aaPredicted RBP4.97□□□□□ -1.61
CD44-239ENST00000639002 OBP2AQ9NY56 170 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 ZNF212Q9UDV6 495 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 G3BP2Q9UN86 482 aaKnown RBP4.97□□□□□ -1.61
CD44-239ENST00000639002 PCDHGB6Q9Y5F9 930 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 SPATA31A1Q5TZJ5 1347 aa4.97□□□□□ -1.61
CD44-239ENST00000639002 MYMKA6NI61 221 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 SNX2O60749 519 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 CBFA2T3O75081 653 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 INMTO95050 263 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 TMEM225BP0DP42 221 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 SNHG28P0DPA3 235 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 KPNB1Q14974 876 aaKnown RBP4.96□□□□□ -1.62
CD44-239ENST00000639002 AASDHQ4L235 1098 aaPredicted RBP4.96□□□□□ -1.62
CD44-239ENST00000639002 MZT2AQ6P582 158 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.96□□□□□ -1.62
CD44-239ENST00000639002 TTC8Q8TAM2 541 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 NSMCE1Q8WV22 266 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 VPS50Q96JG6 964 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 STRBPQ96SI9 672 aaKnown RBP4.96□□□□□ -1.62
CD44-239ENST00000639002 APOL5Q9BWW9 433 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 MAFFQ9ULX9 164 aa4.96□□□□□ -1.62
CD44-239ENST00000639002 CD8B2A6NJW9 211 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 WDR47O94967 919 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 ANXA2P07355 339 aaKnown RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 TMIGD3P0DMS9 266 aaPredicted RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 PSG1P11464 419 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 HOXB6P17509 224 aaKnown RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 TNFRSF1BP20333 461 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 TACR3P29371 465 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 CCKBRP32239 447 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 PBX1P40424 430 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 TXNL4AP83876 142 aaKnown RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 HSF1Q00613 529 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 CCDC15Q0P6D6 951 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 MTX1Q13505 466 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 STIM1Q13586 685 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 PFKFB3Q16875 520 aaPredicted RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 SLC9C1Q4G0N8 1177 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 RRAGBQ5VZM2 374 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 ANKRD13BQ86YJ7 626 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 C16orf71Q8IYS4 520 aaPredicted RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 NGDNQ8NEJ9 315 aaKnown RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 MBD3L2Q8NHZ7 208 aaPredicted RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 PHKBQ93100 1093 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 BRIP1Q9BX63 1249 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 NUAK2Q9H093 628 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 BTBD1Q9H0C5 482 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 ZBTB40Q9NUA8 1239 aa4.95□□□□□ -1.62
CD44-239ENST00000639002 ZNF580Q9UK33 172 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms