RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TRIM65Q6PJ69 517 aa20.19■□□□□ 0.82
CLN3-260ENST00000637578 WDR5BQ86VZ2 330 aa20.19■□□□□ 0.82
CLN3-260ENST00000637578 FAM114A1Q8IWE2 563 aa20.19■□□□□ 0.82
CLN3-260ENST00000637578 DHX40Q8IX18 779 aaKnown RBP20.19■□□□□ 0.82
CLN3-260ENST00000637578 CAMKK1Q8N5S9 505 aa20.19■□□□□ 0.82
CLN3-260ENST00000637578 USP33Q8TEY7 942 aa20.19■□□□□ 0.82
CLN3-260ENST00000637578 LRRC4Q9HBW1 653 aa20.19■□□□□ 0.82
CLN3-260ENST00000637578 FANCLQ9NW38 375 aa20.19■□□□□ 0.82
CLN3-260ENST00000637578 STC2O76061 302 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 COG7P83436 770 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 CDKAL1Q5VV42 579 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 SMYD5Q6GMV2 418 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 PMF1Q6P1K2 205 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 ENOSF1Q7L5Y1 443 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 UBE2TQ9NPD8 197 aaPredicted RBP20.18■□□□□ 0.82
CLN3-260ENST00000637578 POLR3BQ9NW08 1133 aaPredicted RBP20.18■□□□□ 0.82
CLN3-260ENST00000637578 MARK1Q9P0L2 795 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 LSM7Q9UK45 103 aaKnown RBP20.18■□□□□ 0.82
CLN3-260ENST00000637578 SMG5Q9UPR3 1016 aaKnown RBP20.18■□□□□ 0.82
CLN3-260ENST00000637578 SLC8A2Q9UPR5 921 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 WDR87Q6ZQQ6 2873 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 FRYLO94915 3013 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 MYOFQ9NZM1 2061 aa20.18■□□□□ 0.82
CLN3-260ENST00000637578 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.17■□□□□ 0.82
CLN3-260ENST00000637578 KAT7O95251 611 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 KLKB1P03952 638 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 BRD2P25440 801 aaKnown RBP20.17■□□□□ 0.82
CLN3-260ENST00000637578 GRIA2P42262 883 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 ADIGQ0VDE8 80 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 LRSAM1Q6UWE0 723 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 MIB1Q86YT6 1006 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 NDRG1Q92597 394 aaKnown RBP20.17■□□□□ 0.82
CLN3-260ENST00000637578 ACDQ96AP0 544 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 FAM81BQ96LP2 452 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 CRACR2AQ9BSW2 395 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 CBX8Q9HC52 389 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 CNGB3Q9NQW8 809 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 ATG2BQ96BY7 2078 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 ZNF292O60281 2723 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 ANTXRLA6NF34 631 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 KCNJ18B7U540 433 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 CALCAP01258 141 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 SLC9A1P19634 815 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 TNFRSF4P43489 277 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 MTIF2P46199 727 aaKnown RBP20.17■□□□□ 0.82
CLN3-260ENST00000637578 RPL34P49207 117 aaKnown RBP20.17■□□□□ 0.82
CLN3-260ENST00000637578 MRPS21P82921 87 aaKnown RBP20.17■□□□□ 0.82
CLN3-260ENST00000637578 KCNJ12Q14500 433 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 IQCB1Q15051 598 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 HEATR6Q6AI08 1181 aaKnown RBP20.17■□□□□ 0.82
CLN3-260ENST00000637578 GBP6Q6ZN66 633 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 SFTPA1Q8IWL2 248 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 SECISBP2LQ93073 1101 aaKnown RBP20.17■□□□□ 0.82
CLN3-260ENST00000637578 HSD3B7Q9H2F3 369 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 MARCH2Q9P0N8 246 aa20.17■□□□□ 0.82
CLN3-260ENST00000637578 YJEFN3A6XGL0 299 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 E7ENQ6 273 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 TULP3O75386 442 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 APODP05090 189 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 KIR2DL1P43626 348 aaPredicted RBP20.16■□□□□ 0.82
CLN3-260ENST00000637578 MFAP3P55082 362 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 ZNF445P59923 1031 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 EFEMP1Q12805 493 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 DMC1Q14565 340 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 MEA1Q16626 185 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 TCP11X2Q5H9J9 407 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 HSFY1Q96LI6 401 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 TSPY26PQ9H489 355 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 ARHGEF4Q9NR80 690 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 WDR35Q9P2L0 1181 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 EBF1Q9UH73 591 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 ZNF510Q9Y2H8 683 aa20.16■□□□□ 0.82
CLN3-260ENST00000637578 SMTNL1A8MU46 457 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 M0QYV0 167 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 CACNG3O60359 315 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 CAVIN2O95810 425 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 ZNF18P17022 549 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 EEF1GP26641 437 aaKnown RBP20.15■□□□□ 0.82
CLN3-260ENST00000637578 PON1P27169 355 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 GPD2P43304 727 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 DAOAP59103 153 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 MAN2A1Q16706 1144 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 EXOC3L4Q17RC7 722 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 ANO4Q32M45 955 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 HSF5Q4G112 596 aaPredicted RBP20.15■□□□□ 0.82
CLN3-260ENST00000637578 BSPRYQ5W0U4 402 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 BTBD8Q5XKL5 378 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 SIX6OS1Q8N1H7 587 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 DCLK2Q8N568 766 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 NAT16Q8N8M0 369 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 IRGQQ8WZA9 623 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 DCLK3Q9C098 648 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 OLA1Q9NTK5 396 aaKnown RBP20.15■□□□□ 0.82
CLN3-260ENST00000637578 DEC1Q9P2X7 70 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 APEX2Q9UBZ4 518 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 RASAL2Q9UJF2 1139 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 KIAA1549LQ6ZVL6 1849 aa20.15■□□□□ 0.82
CLN3-260ENST00000637578 BECN2A8MW95 431 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 SEC13P55735 322 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 SRSF5Q13243 272 aaKnown RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms