RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 FLT3LGP49771 235 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 MRPS9P82933 396 aaKnown RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 SPP2Q13103 211 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 PDK2Q15119 407 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CFAP157Q5JU67 520 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 IER5Q5VY09 327 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 LMBRD2Q68DH5 695 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CGB2Q6NT52 195 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 C15orf39Q6ZRI6 1047 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 OTOAQ7RTW8 1153 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 PLEKHH3Q7Z736 793 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 ZC3H18Q86VM9 953 aaKnown RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 TMPRSS6Q8IU80 811 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 NUDCD3Q8IVD9 361 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 ST13P4Q8IZP2 240 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 ACTL9Q8TC94 416 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 ASAP3Q8TDY4 903 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 DENND1AQ8TEH3 1009 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 DTNBP1Q96EV8 351 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 NECTIN4Q96NY8 510 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 HERPUD2Q9BSE4 406 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM120AQ9BXJ8 343 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 TEX13BQ9BXU2 312 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 FAM192AQ9GZU8 254 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 PORCNQ9H237 461 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 STN1Q9H668 368 aaKnown RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 ELP3Q9H9T3 547 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 RPF1Q9H9Y2 349 aaKnown RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 XAB2Q9HCS7 855 aaKnown RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 NCDNQ9UBB6 729 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 KIAA1257Q9ULG3 409 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 PCDHGC3Q9UN70 934 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CNTN6Q9UQ52 1028 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CHKBQ9Y259 395 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 PCDHGA4Q9Y5G9 962 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 SNCAIPQ9Y6H5 919 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 STYXL1Q9Y6J8 313 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 NUMBLQ9Y6R0 609 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 GREB1Q4ZG55 1949 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 GOLGA8QA0A0J9YX86 632 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 GOLGA8OA6NCC3 632 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 GOLGA8NF8WBI6 632 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 TBC1D4O60343 1298 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 FKBP6O75344 327 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 USP2O75604 605 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 SMNDC1O75940 238 aaKnown RBP eCLIP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 NPTXRO95502 500 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CCNE2O96020 404 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 ASS1P00966 412 aaKnown RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 IL1BP01584 269 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 KRT19P08727 400 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 RBP3P10745 1247 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 GLRA2P23416 452 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 EPHB2P29323 1055 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 PEX19P40855 299 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 NLRP11P59045 1033 aaKnown RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 NAB1Q13506 487 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 MOGSQ13724 837 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 RCN1Q15293 331 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CLNKQ7Z7G1 428 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 LRRC6Q86X45 466 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CYP4X1Q8N118 509 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 KLHL23Q8NBE8 558 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 GPRC5AQ8NFJ5 357 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 TCP10LQ8TDR4 215 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CFAP36Q96G28 342 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 TRAPPC9Q96Q05 1148 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 FAM118BQ9BPY3 351 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM121Q9BTD3 319 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 YIPF3Q9GZM5 350 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 LHX5Q9H2C1 402 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CYP3A43Q9HB55 503 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 IL23AQ9NPF7 189 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 CISHQ9NSE2 258 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 HOXC10Q9NYD6 342 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 ZC3H7BQ9UGR2 993 aaKnown RBP4.13□□□□□ -1.75
SCN1A-214ENST00000637038 LRRC42Q9Y546 428 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 PATJQ8NI35 1801 aa4.13□□□□□ -1.75
SCN1A-214ENST00000637038 A0A0B4J269 797 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 F8W8V4 182 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 NOP56O00567 594 aaKnown RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 APOL1O14791 398 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PRKCBP05771 671 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CREB1P16220 341 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TGM2P21980 687 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 BDNFP23560 247 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ATICP31939 592 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CDKN2BP42772 138 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 OCRLQ01968 901 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 MAP7Q14244 749 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 RCN2Q14257 317 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 BOLA3Q53S33 107 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FSCBQ5H9T9 825 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM154Q6P9G4 183 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SEPT14Q6ZU15 432 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CCNJLQ8IV13 435 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PPM1NQ8N819 430 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CHST13Q8NET6 341 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SLC35B2Q8TB61 432 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms