RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ODF2Q5BJF6 829 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 STRADAQ7RTN6 431 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 RBM41Q96IZ5 413 aaKnown RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 NAP1L3Q99457 506 aaPredicted RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 PLVAPQ9BX97 442 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 CALN1Q9BXU9 219 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 SAE1Q9UBE0 346 aaPredicted RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 AFF4Q9UHB7 1163 aaKnown RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 SFMBT1Q9UHJ3 866 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 STAP1Q9ULZ2 295 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 MAGED2Q9UNF1 606 aaPredicted RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 SCML2Q9UQR0 700 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 ZSCAN5CA6NGD5 496 aaPredicted RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 RAD51CO43502 376 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 ENDOD1O94919 500 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 ATF2P15336 505 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 IL4RP24394 825 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 KCNJ1P48048 391 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 DYNLT1P63172 113 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 DEUP1Q05D60 604 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 TAF10Q12962 218 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 SNX1Q13596 522 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 TAC4Q86UU9 113 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 DQX1Q8TE96 717 aaKnown RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 C2orf15Q8WU43 125 aaKnown RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 WDR6Q9NNW5 1121 aaKnown RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 DDIT4Q9NX09 232 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 IL37Q9NZH6 218 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 CXCL14O95715 111 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 CTSAP10619 480 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 YWHAQP27348 245 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 RAB33AQ14088 237 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 BOLA3Q53S33 107 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 TFDP3Q5H9I0 405 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 ERMARDQ5T6L9 678 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 BTBD8Q5XKL5 378 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 HAUS1Q96CS2 278 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 PLXNA4Q9HCM2 1894 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 SLC38A8A6NNN8 435 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 MSI1O43347 362 aaKnown RBP20.94■□□□□ 0.94
CLN3-250ENST00000636839 RDXP35241 583 aaKnown RBP20.94■□□□□ 0.94
CLN3-250ENST00000636839 DPYSL3Q14195 570 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 TRADDQ15628 312 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 PPP6R3Q5H9R7 873 aaPredicted RBP20.94■□□□□ 0.94
CLN3-250ENST00000636839 C8orf74Q6P047 294 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 TMC7Q7Z402 723 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 GPR161Q8N6U8 529 aaKnown RBP20.94■□□□□ 0.94
CLN3-250ENST00000636839 CASP10Q92851 521 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 MAGOHBQ96A72 148 aaKnown RBP20.94■□□□□ 0.94
CLN3-250ENST00000636839 SPATA17Q96L03 361 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 DHX35Q9H5Z1 703 aaKnown RBP20.94■□□□□ 0.94
CLN3-250ENST00000636839 FAM204AQ9H8W3 233 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 MTMR10Q9NXD2 777 aa20.94■□□□□ 0.94
CLN3-250ENST00000636839 HIDE1A8MVS5 230 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 DYNC1I1O14576 645 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 TBX18O95935 607 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 CA3P07451 260 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 RPL10AP62906 217 aaKnown RBP20.93■□□□□ 0.94
CLN3-250ENST00000636839 TAZQ16635 292 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 MON1AQ86VX9 555 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 FBXO32Q969P5 355 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 MTIF3Q9H2K0 278 aaKnown RBP20.93■□□□□ 0.94
CLN3-250ENST00000636839 FBXO44Q9H4M3 255 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 PCDH18Q9HCL0 1135 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.93■□□□□ 0.94
CLN3-250ENST00000636839 AP4E1Q9UPM8 1137 aa20.93■□□□□ 0.94
CLN3-250ENST00000636839 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.92■□□□□ 0.94
CLN3-250ENST00000636839 CCDC188H7C350 402 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 MDM4O15151 490 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 DESP17661 470 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 L1CAMP32004 1257 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 PBX2P40425 430 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 SPPL3Q8TCT6 385 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 KCTD15Q96SI1 283 aaPredicted RBP20.92■□□□□ 0.94
CLN3-250ENST00000636839 TCF25Q9BQ70 676 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 ABCC13Q9NSE7 274 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 FZD10Q9ULW2 581 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 GOLGA6L10A0A0M3HER8 536 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 ESYT3A0FGR9 886 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 FAM92AA1XBS5 289 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 TTI1O43156 1089 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 TUFMP49411 452 aaKnown RBP20.92■□□□□ 0.94
CLN3-250ENST00000636839 VSNL1P62760 191 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 KRT81Q14533 505 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 TPGS2Q68CL5 300 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 TEKT4Q8WW24 435 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 RXFP1Q9HBX9 757 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 YIPF1Q9Y548 306 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 SNX10Q9Y5X0 201 aa20.92■□□□□ 0.94
CLN3-250ENST00000636839 MYO7AQ13402 2215 aa20.91■□□□□ 0.94
CLN3-250ENST00000636839 MYO16Q9Y6X6 1858 aa20.91■□□□□ 0.94
CLN3-250ENST00000636839 CST8O60676 142 aa20.91■□□□□ 0.94
CLN3-250ENST00000636839 PHF2O75151 1096 aa20.91■□□□□ 0.94
CLN3-250ENST00000636839 COPS2P61201 443 aa20.91■□□□□ 0.94
CLN3-250ENST00000636839 PLPP4Q5VZY2 271 aa20.91■□□□□ 0.94
CLN3-250ENST00000636839 POF1BQ8WVV4 589 aa20.91■□□□□ 0.94
CLN3-250ENST00000636839 COL4A4P53420 1690 aaPredicted RBP20.91■□□□□ 0.94
CLN3-250ENST00000636839 ZNF638Q14966 1978 aaKnown RBP20.9■□□□□ 0.94
CLN3-250ENST00000636839 PRRG1O14668 218 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 TGM5O43548 720 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms