RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 C10orf120Q5SQS8 335 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 NUDT18Q6ZVK8 323 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 SCD5Q86SK9 330 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 FAM186BQ8IYM0 893 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 CHPFQ8IZ52 775 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 EEF2KMTQ96G04 330 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 XPO6Q96QU8 1125 aaKnown RBP17.02■□□□□ 0.32
CLN3-246ENST00000636228 CD93Q9NPY3 652 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLN3-246ENST00000636228 USP25Q9UHP3 1055 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 EVLQ9UI08 416 aaPredicted RBP17.02■□□□□ 0.32
CLN3-246ENST00000636228 NAGPAQ9UK23 515 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 LSM7Q9UK45 103 aaKnown RBP17.02■□□□□ 0.32
CLN3-246ENST00000636228 CYP8B1Q9UNU6 501 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 STARD13Q9Y3M8 1113 aa17.02■□□□□ 0.32
CLN3-246ENST00000636228 CHD8Q9HCK8 2581 aa17.02■□□□□ 0.31
CLN3-246ENST00000636228 C1QTNF9BB2RNN3 333 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 CACNG3O60359 315 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 CILPO75339 1184 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 CISD3P0C7P0 127 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 C1QTNF9P0C862 333 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 NDUFV2P19404 249 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 KIF11P52732 1056 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 DPYDQ12882 1025 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 PPP1R26Q5T8A7 1209 aaPredicted RBP17.01■□□□□ 0.31
CLN3-246ENST00000636228 KCNV2Q8TDN2 545 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 IPO4Q8TEX9 1081 aaKnown RBP17.01■□□□□ 0.31
CLN3-246ENST00000636228 HEXIM2Q96MH2 286 aaKnown RBP17.01■□□□□ 0.31
CLN3-246ENST00000636228 IMPG2Q9BZV3 1241 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 NIF3L1Q9GZT8 377 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 CYP3A43Q9HB55 503 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 CD248Q9HCU0 757 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 CACNA2D2Q9NY47 1150 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 WDR35Q9P2L0 1181 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 PILRBQ9UKJ0 227 aa17.01■□□□□ 0.31
CLN3-246ENST00000636228 MYOFQ9NZM1 2061 aa17■□□□□ 0.31
CLN3-246ENST00000636228 CNOT1A5YKK6 2376 aaKnown RBP17■□□□□ 0.31
CLN3-246ENST00000636228 IGHV1OR15-9A0A0B4J2B8 117 aa17■□□□□ 0.31
CLN3-246ENST00000636228 AP5Z1O43299 807 aa17■□□□□ 0.31
CLN3-246ENST00000636228 STC2O76061 302 aa17■□□□□ 0.31
CLN3-246ENST00000636228 RHOBTB3O94955 611 aa17■□□□□ 0.31
CLN3-246ENST00000636228 KLKB1P03952 638 aa17■□□□□ 0.31
CLN3-246ENST00000636228 HMBSP08397 361 aa17■□□□□ 0.31
CLN3-246ENST00000636228 KRT13P13646 458 aa17■□□□□ 0.31
CLN3-246ENST00000636228 CEACAM1P13688 526 aa17■□□□□ 0.31
CLN3-246ENST00000636228 CSRP1P21291 193 aaKnown RBP17■□□□□ 0.31
CLN3-246ENST00000636228 PLA2G4AP47712 749 aa17■□□□□ 0.31
CLN3-246ENST00000636228 DGKGP49619 791 aa17■□□□□ 0.31
CLN3-246ENST00000636228 GOLGA8FQ08AF8 430 aa17■□□□□ 0.31
CLN3-246ENST00000636228 GOLGA8DPQ0D2H9 430 aa17■□□□□ 0.31
CLN3-246ENST00000636228 LMAN2Q12907 356 aa17■□□□□ 0.31
CLN3-246ENST00000636228 ADAM9Q13443 819 aa17■□□□□ 0.31
CLN3-246ENST00000636228 SDE2Q6IQ49 451 aa17■□□□□ 0.31
CLN3-246ENST00000636228 Q6ZNB5 142 aa17■□□□□ 0.31
CLN3-246ENST00000636228 INTS8Q75QN2 995 aaKnown RBP17■□□□□ 0.31
CLN3-246ENST00000636228 OR2I1PQ8NGU4 316 aa17■□□□□ 0.31
CLN3-246ENST00000636228 SEMA4DQ92854 862 aa17■□□□□ 0.31
CLN3-246ENST00000636228 GTPBP2Q9BX10 602 aaKnown RBP17■□□□□ 0.31
CLN3-246ENST00000636228 GOLPH3LQ9H4A5 285 aa17■□□□□ 0.31
CLN3-246ENST00000636228 MARK1Q9P0L2 795 aa17■□□□□ 0.31
CLN3-246ENST00000636228 DNMT3LQ9UJW3 386 aa17■□□□□ 0.31
CLN3-246ENST00000636228 RALYQ9UKM9 306 aaKnown RBP17■□□□□ 0.31
CLN3-246ENST00000636228 PCDHA5Q9Y5H7 936 aa17■□□□□ 0.31
CLN3-246ENST00000636228 MAPK13O15264 365 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 MYL1P05976 194 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 TRIM21P19474 475 aaKnown RBP16.99■□□□□ 0.31
CLN3-246ENST00000636228 PSMC2P35998 433 aaKnown RBP16.99■□□□□ 0.31
CLN3-246ENST00000636228 ZNF33AQ06730 810 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 SPDYCQ5MJ68 293 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 SLC23A3Q6PIS1 610 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 SLC41A1Q8IVJ1 513 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 SMYD4Q8IYR2 804 aaPredicted RBP16.99■□□□□ 0.31
CLN3-246ENST00000636228 CCDC47Q96A33 483 aaKnown RBP16.99■□□□□ 0.31
CLN3-246ENST00000636228 GABRG3Q99928 467 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 DUSP16Q9BY84 665 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 TMEM8AQ9HCN3 771 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 RASAL2Q9UJF2 1139 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 WASF3Q9UPY6 502 aa16.99■□□□□ 0.31
CLN3-246ENST00000636228 MAP1BP46821 2468 aaKnown RBP16.99■□□□□ 0.31
CLN3-246ENST00000636228 THADAQ6YHU6 1953 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 ZBTB24O43167 697 aaPredicted RBP16.98■□□□□ 0.31
CLN3-246ENST00000636228 PROS1P07225 676 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 KRT85P78386 507 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 EFEMP1Q12805 493 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 NFIL3Q16649 462 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 PEAR1Q5VY43 1037 aaPredicted RBP16.98■□□□□ 0.31
CLN3-246ENST00000636228 KLHDC10Q6PID8 442 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 SLC36A4Q6YBV0 504 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 KRBA2Q6ZNG9 492 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 CCDC186Q7Z3E2 898 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 TRIML1Q8N9V2 468 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 ARID3AQ99856 593 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 PNPLA8Q9NP80 782 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 SLC6A14Q9UN76 642 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 USP3Q9Y6I4 520 aa16.98■□□□□ 0.31
CLN3-246ENST00000636228 FAM237AA0A1B0GTK4 181 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 SPAARA0A1B0GVQ0 90 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 RALAP11233 206 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 RPL13P26373 211 aaKnown RBP16.97■□□□□ 0.31
CLN3-246ENST00000636228 DUOXA1Q1HG43 343 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms