RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 TRPM5Q9NZQ8 1165 aa18.59■□□□□ 0.57
PTCHD3-202ENST00000622555 COX16Q9P0S2 106 aa18.59■□□□□ 0.57
PTCHD3-202ENST00000622555 NUDT5Q9UKK9 219 aa18.59■□□□□ 0.57
PTCHD3-202ENST00000622555 DOCK6Q96HP0 2047 aa18.59■□□□□ 0.57
PTCHD3-202ENST00000622555 CCDC66A2RUB6 948 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 RARGP13631 454 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 CTNNA2P26232 953 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 MIPP30301 263 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 PCK1P35558 622 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 MARCKSL1P49006 195 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 NME3Q13232 169 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 HADHQ16836 314 aaKnown RBP18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 OTUD1Q5VV17 481 aaPredicted RBP18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 PAPD7Q5XG87 772 aaKnown RBP18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 SCYL2Q6P3W7 929 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 STRADAQ7RTN6 431 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 RHOT1Q8IXI2 618 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 DQX1Q8TE96 717 aaKnown RBP18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 UBE2Q2Q8WVN8 375 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 CDCA3Q99618 268 aaPredicted RBP18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 NCAPGQ9BPX3 1015 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 ZNF334Q9HCZ1 680 aaPredicted RBP18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 PCSK1NQ9UHG2 260 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 SNX12Q9UMY4 172 aa18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.58■□□□□ 0.57
PTCHD3-202ENST00000622555 DENND4CQ5VZ89 1909 aa18.58■□□□□ 0.56
PTCHD3-202ENST00000622555 DDX3YO15523 660 aaKnown RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 PSTPIP1O43586 416 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 TRUB2O95900 331 aaKnown RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 HOXA9P31269 272 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 RDXP35241 583 aaKnown RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 HDAC4P56524 1084 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 RBM10P98175 930 aaKnown RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 DEUP1Q05D60 604 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 TAC4Q86UU9 113 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 PRDM12Q9H4Q4 367 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 NSUN3Q9H649 340 aaKnown RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 IGFLR1Q9H665 355 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 ZWILCHQ9H900 591 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 DDIT4Q9NX09 232 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 CALCOCO1Q9P1Z2 691 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 USP18Q9UMW8 372 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 PCDHA3Q9Y5H8 950 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 ZNF840PA6NDX5 716 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 KCNK3O14649 394 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 PRPSAP2O60256 369 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 URI1O94763 535 aaPredicted RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 HNRNPA1P09651 372 aaKnown RBP eCLIP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 CXCR5P32302 372 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 PPP3CCP48454 512 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 ATXN1P54253 815 aaKnown RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 SLC25A11Q02978 314 aaKnown RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 C10orf120Q5SQS8 335 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 ZNF697Q5TEC3 545 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 HS6ST3Q8IZP7 471 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 ALG3Q92685 438 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 CORO1BQ9BR76 489 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 SMOC2Q9H3U7 446 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 OLA1Q9NTK5 396 aaKnown RBP18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 SAR1BQ9Y6B6 198 aa18.57■□□□□ 0.56
PTCHD3-202ENST00000622555 TMEM265A0A087WTH1 108 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 XYLBO75191 536 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 TADA3O75528 432 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 ENDOD1O94919 500 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 IL1R2P27930 398 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 GBP1P32455 592 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 AMPD2Q01433 879 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 ZFYVE27Q5T4F4 411 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 LRRC38Q5VT99 294 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 SNX30Q5VWJ9 437 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 MSANTD2Q6P1R3 559 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 BNIPLQ7Z465 357 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 CASP10Q92851 521 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 PGAP3Q96FM1 320 aaPredicted RBP18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 OSBPL9Q96SU4 736 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 TTYH1Q9H313 450 aaPredicted RBP18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 CCSER2Q9H7U1 834 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 ASAH2Q9NR71 780 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 PIGVQ9NUD9 493 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 ZDHHC7Q9NXF8 308 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 SFMBT1Q9UHJ3 866 aa18.56■□□□□ 0.56
PTCHD3-202ENST00000622555 TLR5O60602 858 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 SRGAP2O75044 1071 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 F9P00740 461 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 F11P03951 625 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 KRT7P08729 469 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 TCP1P17987 556 aaKnown RBP18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 PEX5P50542 639 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 RWDD2BP57060 319 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 EFEMP1Q12805 493 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 SMTNL2Q2TAL5 461 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 PABPC1LQ4VXU2 614 aaKnown RBP18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 TCEAL5Q5H9L2 206 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 TXNRD3NBQ6F5E7 133 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 SND1Q7KZF4 910 aaKnown RBP eCLIP18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 POLNQ7Z5Q5 900 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 TMEM150AQ86TG1 271 aa18.55■□□□□ 0.56
PTCHD3-202ENST00000622555 FAM131BQ86XD5 332 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms