RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 GJA8P48165 433 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 CDK9P50750 372 aaKnown RBP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 FAAP100Q0VG06 881 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 MAMLD1Q13495 774 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 BTG3Q14201 252 aaPredicted RBP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 DEFB115Q30KQ5 88 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 BBS9Q3SYG4 887 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 KBTBD12Q3ZCT8 623 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 TFDP3Q5H9I0 405 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 ZFP1Q6P2D0 407 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 SPOCD1Q6ZMY3 1216 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 FBXW8Q8N3Y1 598 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 DQX1Q8TE96 717 aaKnown RBP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 DCAF4Q8WV16 495 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 HSPBAP1Q96EW2 488 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 LRGUKQ96M69 825 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 PRPF18Q99633 342 aaKnown RBP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 SENP7Q9BQF6 1050 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 TMEM121Q9BTD3 319 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 YIPF2Q9BWQ6 316 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 THAP1Q9NVV9 213 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 UBAP1Q9NZ09 502 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF180Q9UJW8 692 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 TMED5Q9Y3A6 229 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 AP4B1Q9Y6B7 739 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 CEPT1Q9Y6K0 416 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 RBBP6Q7Z6E9 1792 aaKnown RBP11.21□□□□□ -0.62
UPF3A-212ENST00000619079 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 RBM47A0AV96 593 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 TLR3O15455 904 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 CRTAMO95727 393 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 SNRPAP09012 282 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 PTPRAP18433 802 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 MSS51Q4VC12 460 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 NOL9Q5SY16 702 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 PLEKHA7Q6IQ23 1121 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 CCDC80Q76M96 950 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 ERO1BQ86YB8 467 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 ADCY4Q8NFM4 1077 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 SLC35B2Q8TB61 432 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 CCDC124Q96CT7 223 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 WDR11Q9BZH6 1224 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 DHX33Q9H6R0 707 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 PARVAQ9NVD7 372 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 DDX56Q9NY93 547 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 ZNFX1Q9P2E3 1918 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 TRPM7Q96QT4 1865 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 hCG_1818297A0A087WSY0 165 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 TCRBV9S1A1TA0A576 114 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 UNCXA6NJT0 531 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 MAGEB3O15480 346 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 PSMD10O75832 226 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 PROCP04070 461 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 JAG1P78504 1218 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 MYBPC1Q00872 1141 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 GSTM4Q03013 218 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 STX3Q13277 289 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 PDAP1Q13442 181 aaKnown RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 WDR78Q5VTH9 848 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 MFSD7Q6UXD7 560 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 AS3MTQ9HBK9 375 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 MARCOQ9UEW3 520 aaPredicted RBP11.2□□□□□ -0.62
UPF3A-212ENST00000619079 SIPA1L1O43166 1804 aa11.2□□□□□ -0.62
UPF3A-212ENST00000619079 IGLV3-22A0A075B6J6 115 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 SPDYE16A6NNV3 312 aaPredicted RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 PI4K2BG5E9Z4 385 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 CHMP2AO43633 222 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 KITP10721 976 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 ZNF23P17027 643 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 PRDX6P30041 224 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 C1QBPQ07021 282 aaKnown RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 ZYXQ15942 572 aaKnown RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 SNRNP35Q16560 246 aaKnown RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 RALGPS1Q5JS13 557 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 SYCP2LQ5T4T6 812 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 ANKRD22Q5VYY1 191 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 PHF13Q86YI8 300 aaPredicted RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 FEZF2Q8TBJ5 459 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 TMC2Q8TDI7 906 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 ABHD8Q96I13 439 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 CNBD2Q96M20 576 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 P2RX7Q99572 595 aaKnown RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 WDR83Q9BRX9 315 aaKnown RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 OSBPL6Q9BZF3 934 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 ST6GALNAC4Q9H4F1 302 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 XAB2Q9HCS7 855 aaKnown RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 PNPLA8Q9NP80 782 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 PFDN4Q9NQP4 134 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 C1orf112Q9NSG2 853 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 RRN3Q9NYV6 651 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 XPO7Q9UIA9 1087 aaKnown RBP11.19□□□□□ -0.62
UPF3A-212ENST00000619079 APPL1Q9UKG1 709 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 EFR3BQ9Y2G0 817 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 LOXHD1Q8IVV2 1947 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 TRIM49D1C9J1S8 452 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 ITM2AO43736 263 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 GAS7O60861 476 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 ZNF24P17028 368 aa11.19□□□□□ -0.62
UPF3A-212ENST00000619079 SPP2Q13103 211 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms