RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PRPF4O43172 522 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS39-214ENST00000614932 CXCR2P25025 360 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 CPA2P48052 419 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 PPP2R2BQ00005 443 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 SPIRE1Q08AE8 756 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 MOGQ16653 247 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 HP1BP3Q5SSJ5 553 aaPredicted RBP10.58□□□□□ -0.72
VPS39-214ENST00000614932 FAM91A1Q658Y4 838 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 FRA10AC1Q70Z53 315 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 GMCL1P1Q8NEA9 526 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 GMCL1Q96IK5 515 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 UQCC2Q9BRT2 126 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 DCUN1D5Q9BTE7 237 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 WDR18Q9BV38 432 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 MRIQ9BWK5 157 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 FBXO6Q9NRD1 293 aaPredicted RBP10.58□□□□□ -0.72
VPS39-214ENST00000614932 NDFIP2Q9NV92 336 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 HDAC9Q9UKV0 1011 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 AGO2Q9UKV8 859 aaKnown RBP10.58□□□□□ -0.72
VPS39-214ENST00000614932 GRID1Q9ULK0 1009 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 SPEF1Q9Y4P9 236 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 PCDHA3Q9Y5H8 950 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 QSER1Q2KHR3 1735 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 SNTNA6NMZ2 147 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 GMNNO75496 209 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 KLHL2O95198 593 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 CRTAMO95727 393 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 TTC4O95801 387 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 CHRNA3P32297 505 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 P2RX3P56373 397 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 CXCL9Q07325 125 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 SELENBP1Q13228 472 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 ORC2Q13416 577 aaPredicted RBP10.58□□□□□ -0.72
VPS39-214ENST00000614932 CYFIP1Q7L576 1253 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 TSPAN14Q8NG11 270 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 SLC26A7Q8TE54 656 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 C18orf8Q96DM3 657 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 CIB1Q99828 191 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 MKNK1Q9BUB5 465 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 RUSC1Q9BVN2 902 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 VPS45Q9NRW7 570 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 HMGXB4Q9UGU5 601 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 BCS1LQ9Y276 419 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 A8MU76 341 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 SNX2O60749 519 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 MYO1DO94832 1006 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ALX3O95076 343 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 CETPP11597 493 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ADCY8P40145 1251 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 SLC12A3P55017 1021 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 B2MP61769 119 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 EFHC1Q5JVL4 640 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 OGFRL1Q5TC84 451 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 GPR180Q86V85 440 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 NIM1KQ8IY84 436 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 TRUB1Q8WWH5 349 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 DCUN1D1Q96GG9 259 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 WNK4Q96J92 1243 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 TDRD1Q9BXT4 1180 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 ZNF341Q9BYN7 854 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 EPS15L1Q9UBC2 864 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 PCYOX1Q9UHG3 505 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 DNM3Q9UQ16 869 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 INPP5FQ9Y2H2 1132 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 AP4B1Q9Y6B7 739 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ZNF701M0R085 212 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 PSMD12O00232 456 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 WNT10BO00744 389 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 GABBR2O75899 941 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ARP10275 920 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ACTN1P12814 892 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 PRKCAP17252 672 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 NR4A1P22736 598 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 IL32P24001 234 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ANXA13P27216 316 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 RPA1P27694 616 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ZNF135P52742 658 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 FKBP1AP62942 108 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 ZNF200P98182 395 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 PTK2BQ14289 1009 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 STILQ15468 1287 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 OASLQ15646 514 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 INSCQ1MX18 579 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 RNF19BQ6ZMZ0 732 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 SAMD7Q7Z3H4 446 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 GSTCDQ8NEC7 633 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 FBXO27Q8NI29 283 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ADAMTS16Q8TE57 1224 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 FAM151AQ8WW52 585 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ZNF641Q96N77 438 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 RBM15Q96T37 977 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS39-214ENST00000614932 EIF2AK1Q9BQI3 630 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 CCDC77Q9BR77 488 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 C17orf80Q9BSJ5 609 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ANKMY1Q9P2S6 941 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 KCNN3Q9UGI6 736 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 SMG5Q9UPR3 1016 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 KDM3AQ9Y4C1 1321 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 GOLGA8QA0A0J9YX86 632 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ILVBLA1L0T0 632 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms