RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 RNF43Q68DV7 783 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 ANKRD40Q6AI12 368 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 GRAMD4Q6IC98 578 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 Q6ZNB5 142 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 TPGS1Q6ZTW0 290 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 LPCAT2Q7L5N7 544 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 CCDC186Q7Z3E2 898 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 TRMT11Q7Z4G4 463 aaKnown RBP8.02□□□□□ -1.13
CUX1-219ENST00000606749 TADA2BQ86TJ2 420 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 MIB1Q86YT6 1006 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 TTC39CQ8N584 583 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 ZNF513Q8N8E2 541 aaPredicted RBP8.02□□□□□ -1.13
CUX1-219ENST00000606749 TERB1Q8NA31 727 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 SLC4A11Q8NBS3 891 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 ENGASEQ8NFI3 743 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 HMGB4Q8WW32 186 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 CCDC34Q96HJ3 373 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 GSDMAQ96QA5 445 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 XPO6Q96QU8 1125 aaKnown RBP8.02□□□□□ -1.13
CUX1-219ENST00000606749 BBS2Q9BXC9 721 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 DNAI2Q9GZS0 605 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 CISHQ9NSE2 258 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 DNAJC17Q9NVM6 304 aaKnown RBP8.02□□□□□ -1.13
CUX1-219ENST00000606749 BCCIPQ9P287 314 aaKnown RBP eCLIP8.02□□□□□ -1.13
CUX1-219ENST00000606749 MBD1Q9UIS9 605 aaPredicted RBP8.02□□□□□ -1.13
CUX1-219ENST00000606749 NAGPAQ9UK23 515 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 LSM7Q9UK45 103 aaKnown RBP8.02□□□□□ -1.13
CUX1-219ENST00000606749 FBXO10Q9UK96 956 aa8.02□□□□□ -1.13
CUX1-219ENST00000606749 MYO18AQ92614 2054 aaKnown RBP8.02□□□□□ -1.13
CUX1-219ENST00000606749 THADAQ6YHU6 1953 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 A0A1W2PQF6 199 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 TCRBV21S2A2A0A5A6 115 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 LNP1A1A4G5 178 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 C4orf47A7E2U8 309 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 PATE3B3GLJ2 98 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 PRRT4C9JH25 899 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 CDX4O14627 284 aaPredicted RBP8.01□□□□□ -1.13
CUX1-219ENST00000606749 KCNK5O95279 499 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 GABRG2P18507 467 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 NTSR1P30989 418 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 WASP42768 502 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 MXI1P50539 228 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 PMS1P54277 932 aaKnown RBP8.01□□□□□ -1.13
CUX1-219ENST00000606749 COG7P83436 770 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 FKBP3Q00688 224 aaKnown RBP8.01□□□□□ -1.13
CUX1-219ENST00000606749 CBWD6Q4V339 395 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 COBLL1Q53SF7 1204 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 RAB41Q5JT25 222 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 CBWD3Q5JTY5 395 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 SPDYCQ5MJ68 293 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 CBWD5Q5RIA9 395 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 EGFLAMQ63HQ2 1017 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 ARHGAP17Q68EM7 881 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 TOGARAM2Q6ZUX3 1019 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 CYP2U1Q7Z449 544 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 ZC3H3Q8IXZ2 948 aaKnown RBP8.01□□□□□ -1.13
CUX1-219ENST00000606749 TMEFF1Q8IYR6 380 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 PGBD3Q8N328 593 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 ANKRD52Q8NB46 1076 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 SPATA20Q8TB22 786 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 PIGKQ92643 395 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 P2RY11Q96G91 374 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 SPACA7Q96KW9 195 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 CDK5RAP1Q96SZ6 601 aaKnown RBP8.01□□□□□ -1.13
CUX1-219ENST00000606749 ACOX2Q99424 681 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 ARID3AQ99856 593 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 EDEM2Q9BV94 578 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 FAM124BQ9H5Z6 455 aaPredicted RBP8.01□□□□□ -1.13
CUX1-219ENST00000606749 CD248Q9HCU0 757 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 TMEM74BQ9NUR3 256 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 RMND1Q9NWS8 449 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 CLIC5Q9NZA1 410 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 MARK1Q9P0L2 795 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 CIZ1Q9ULV3 898 aaPredicted RBP8.01□□□□□ -1.13
CUX1-219ENST00000606749 COQ4Q9Y3A0 265 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 GTF3C3Q9Y5Q9 886 aa8.01□□□□□ -1.13
CUX1-219ENST00000606749 GOLGA6L4A6NEF3 574 aa8□□□□□ -1.13
CUX1-219ENST00000606749 WASH3PC4AMC7 463 aa8□□□□□ -1.13
CUX1-219ENST00000606749 SMC2O95347 1197 aa8□□□□□ -1.13
CUX1-219ENST00000606749 HOXB2P14652 356 aa8□□□□□ -1.13
CUX1-219ENST00000606749 CHKAP35790 457 aa8□□□□□ -1.13
CUX1-219ENST00000606749 PTGER3P43115 390 aa8□□□□□ -1.13
CUX1-219ENST00000606749 DGKGP49619 791 aa8□□□□□ -1.13
CUX1-219ENST00000606749 TKTL1P51854 596 aa8□□□□□ -1.13
CUX1-219ENST00000606749 EFEMP1Q12805 493 aa8□□□□□ -1.13
CUX1-219ENST00000606749 TCERG1LQ5VWI1 586 aa8□□□□□ -1.13
CUX1-219ENST00000606749 DAB2IPQ5VWQ8 1189 aa8□□□□□ -1.13
CUX1-219ENST00000606749 PM20D1Q6GTS8 502 aa8□□□□□ -1.13
CUX1-219ENST00000606749 SDE2Q6IQ49 451 aa8□□□□□ -1.13
CUX1-219ENST00000606749 KIAA1211LQ6NV74 962 aa8□□□□□ -1.13
CUX1-219ENST00000606749 PIGZQ86VD9 579 aa8□□□□□ -1.13
CUX1-219ENST00000606749 SYT12Q8IV01 421 aa8□□□□□ -1.13
CUX1-219ENST00000606749 CHPFQ8IZ52 775 aa8□□□□□ -1.13
CUX1-219ENST00000606749 ARHGAP18Q8N392 663 aa8□□□□□ -1.13
CUX1-219ENST00000606749 IPO4Q8TEX9 1081 aaKnown RBP8□□□□□ -1.13
CUX1-219ENST00000606749 NDRG1Q92597 394 aaKnown RBP8□□□□□ -1.13
CUX1-219ENST00000606749 ERCC4Q92889 916 aaPredicted RBP8□□□□□ -1.13
CUX1-219ENST00000606749 BHMTQ93088 406 aa8□□□□□ -1.13
CUX1-219ENST00000606749 TSG101Q99816 390 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms