RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 DEPTORQ8TB45 409 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 NAT14Q8WUY8 206 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 ABTB1Q969K4 478 aaPredicted RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 APPL1Q9UKG1 709 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 SOX13Q9UN79 622 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 VAV1P15498 845 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 VCLP18206 1134 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 GARTP22102 1010 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 CRABP2P29373 138 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 GHRHRQ02643 423 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 SLC18A2Q05940 514 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 MSLNQ13421 630 aaPredicted RBP19.02■□□□□ 0.63
UPF1-210ENST00000600689 HADHQ16836 314 aaKnown RBP19.02■□□□□ 0.63
UPF1-210ENST00000600689 ANGEL2Q5VTE6 544 aaKnown RBP19.02■□□□□ 0.63
UPF1-210ENST00000600689 DLK2Q6UY11 383 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 ATXN7L3BQ96GX2 97 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 CCDC106Q9BWC9 280 aa19.02■□□□□ 0.63
UPF1-210ENST00000600689 MIPP30301 263 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 IYDQ6PHW0 289 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 MPP5Q8N3R9 675 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 XAB2Q9HCS7 855 aaKnown RBP19.01■□□□□ 0.63
UPF1-210ENST00000600689 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.01■□□□□ 0.63
UPF1-210ENST00000600689 PNPOQ9NVS9 261 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 GALNT8Q9NY28 637 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 F8W8V4 182 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 TRPA1O75762 1119 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 PTPRAP18433 802 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 STIP1P31948 543 aaKnown RBP19.01■□□□□ 0.63
UPF1-210ENST00000600689 GRIA1P42261 906 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 SH2D5Q6ZV89 423 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 SAMD3Q8N6K7 520 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 ANKEF1Q9NU02 776 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 CYTH4Q9UIA0 394 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 POLIQ9UNA4 740 aa19.01■□□□□ 0.63
UPF1-210ENST00000600689 DOCK5Q9H7D0 1870 aa19■□□□□ 0.63
UPF1-210ENST00000600689 COL11A1P12107 1806 aaPredicted RBP19■□□□□ 0.63
UPF1-210ENST00000600689 CD1EP15812 388 aa19■□□□□ 0.63
UPF1-210ENST00000600689 PDK3Q15120 406 aa19■□□□□ 0.63
UPF1-210ENST00000600689 BBS12Q6ZW61 710 aa19■□□□□ 0.63
UPF1-210ENST00000600689 FAM172AQ8WUF8 416 aa19■□□□□ 0.63
UPF1-210ENST00000600689 MOCOSQ96EN8 888 aa19■□□□□ 0.63
UPF1-210ENST00000600689 MAGED2Q9UNF1 606 aaPredicted RBP19■□□□□ 0.63
UPF1-210ENST00000600689 TEX264Q9Y6I9 313 aa19■□□□□ 0.63
UPF1-210ENST00000600689 PFDN1O60925 122 aa19■□□□□ 0.63
UPF1-210ENST00000600689 YWHAZP63104 245 aaKnown RBP19■□□□□ 0.63
UPF1-210ENST00000600689 SLC25A11Q02978 314 aaKnown RBP19■□□□□ 0.63
UPF1-210ENST00000600689 GK3PQ14409 553 aa19■□□□□ 0.63
UPF1-210ENST00000600689 C15orf59Q2T9L4 293 aaPredicted RBP19■□□□□ 0.63
UPF1-210ENST00000600689 FASTKD1Q53R41 847 aaKnown RBP19■□□□□ 0.63
UPF1-210ENST00000600689 FBXL19Q6PCT2 694 aa19■□□□□ 0.63
UPF1-210ENST00000600689 PDSS2Q86YH6 399 aa19■□□□□ 0.63
UPF1-210ENST00000600689 PGLYRP2Q96PD5 576 aa19■□□□□ 0.63
UPF1-210ENST00000600689 KLHL4Q9C0H6 718 aa19■□□□□ 0.63
UPF1-210ENST00000600689 DDX43Q9NXZ2 648 aaKnown RBP19■□□□□ 0.63
UPF1-210ENST00000600689 TTLL3Q9Y4R7 772 aa19■□□□□ 0.63
UPF1-210ENST00000600689 E7ESA3 106 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 RFPL1O75677 317 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 RGS20O76081 388 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 NR3C2P08235 984 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 JAK3P52333 1124 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 TRPC3Q13507 836 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 ZNF280CQ8ND82 737 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.99■□□□□ 0.634e-7■■■□□ 18.4
UPF1-210ENST00000600689 GRIP2Q9C0E4 1043 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 RBL1P28749 1068 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 CCNIQ14094 377 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 EML3Q32P44 896 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 RBM44Q6ZP01 1051 aaKnown RBP18.99■□□□□ 0.63
UPF1-210ENST00000600689 ARHGAP18Q8N392 663 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 SNRNP27Q8WVK2 155 aaKnown RBP18.99■□□□□ 0.63
UPF1-210ENST00000600689 AZIN2Q96A70 460 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 PGBD4Q96DM1 585 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 CNBD2Q96M20 576 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 CYP26B1Q9NR63 512 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 APOBEC2Q9Y235 224 aaKnown RBP18.99■□□□□ 0.63
UPF1-210ENST00000600689 LOXHD1Q8IVV2 1947 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 ADCY3O60266 1144 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 DGKIO75912 1065 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 LYPLA2O95372 231 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 TMEM132BQ14DG7 1078 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 TRPM4Q8TD43 1214 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 DEPDC1BQ8WUY9 529 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 CPXM1Q96SM3 734 aa18.99■□□□□ 0.63
UPF1-210ENST00000600689 UQCRBP14927 111 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 TBXAS1P24557 533 aaPredicted RBP18.98■□□□□ 0.63
UPF1-210ENST00000600689 RPS12P25398 132 aaKnown RBP18.98■□□□□ 0.63
UPF1-210ENST00000600689 KRT76Q01546 638 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 TTLL12Q14166 644 aaPredicted RBP18.98■□□□□ 0.63
UPF1-210ENST00000600689 LRRC38Q5VT99 294 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 ACAD11Q709F0 780 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 THNSL1Q8IYQ7 743 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 GALNT4Q8N4A0 578 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 STKLD1Q8NE28 680 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 INPP5FQ9Y2H2 1132 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 E9PBE3 544 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 DCXO43602 365 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 KLHL41O60662 606 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 KRT7P08729 469 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 OSBPP22059 807 aa18.98■□□□□ 0.63
UPF1-210ENST00000600689 COPAP53621 1224 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms