RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.47□□□□□ -1.37
VRK3-220ENST00000600259 RAD54BQ9Y620 910 aa6.47□□□□□ -1.37
VRK3-220ENST00000600259 URB1O60287 2271 aaKnown RBP6.47□□□□□ -1.37
VRK3-220ENST00000600259 HELZP42694 1942 aaKnown RBP6.46□□□□□ -1.37
VRK3-220ENST00000600259 CABIN1Q9Y6J0 2220 aa6.46□□□□□ -1.37
VRK3-220ENST00000600259 AP1G2O75843 785 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 IRF1P10914 325 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 SYT1P21579 422 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 RDXP35241 583 aaKnown RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 NASPP49321 788 aaPredicted RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 SNRPFP62306 86 aaKnown RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 TNNC1P63316 161 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 CEBPZQ03701 1054 aaKnown RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 IFRD2Q12894 506 aaPredicted RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 GRIK2Q13002 908 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 CAMK2BQ13554 666 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 BMT2Q1RMZ1 405 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 COL28A1Q2UY09 1125 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 ANO4Q32M45 955 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 PLEKHG6Q3KR16 790 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 FUT11Q495W5 492 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 PREPLQ4J6C6 727 aaPredicted RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 FAM26FQ5R3K3 315 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 C1orf220Q5T0J3 134 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 GRAMD4Q6IC98 578 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 KLHDC10Q6PID8 442 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 TMPRSS7Q7RTY8 843 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 GPRIN1Q7Z2K8 1008 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 SCD5Q86SK9 330 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 ACOT1Q86TX2 421 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 PDZD3Q86UT5 571 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 NAXDQ8IW45 347 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 CHPFQ8IZ52 775 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 ZNF276Q8N554 614 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 PDILTQ8N807 584 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 XXYLT1Q8NBI6 393 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 LINC00301Q8NCQ3 95 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 TMEM174Q8WUU8 243 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 SYAP1Q96A49 352 aaPredicted RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 ERLEC1Q96DZ1 483 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 SMARCD1Q96GM5 515 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 TOE1Q96GM8 510 aaKnown RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 C7orf25Q9BPX7 421 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 ZDHHC5Q9C0B5 715 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 TNMDQ9H2S6 317 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 DMAP1Q9NPF5 467 aaPredicted RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 DNAJC17Q9NVM6 304 aaKnown RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.46□□□□□ -1.38
VRK3-220ENST00000600259 WDR35Q9P2L0 1181 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 THAP10Q9P2Z0 257 aaPredicted RBP6.46□□□□□ -1.38
VRK3-220ENST00000600259 DKK4Q9UBT3 224 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 PCOLCE2Q9UKZ9 415 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 SCML2Q9UQR0 700 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 MTMR6Q9Y217 621 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 SLC27A6Q9Y2P4 619 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 NFE2L3Q9Y4A8 694 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 SLCO1B1Q9Y6L6 691 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 STON1Q9Y6Q2 735 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 PLXNB3Q9ULL4 1909 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 CFAP46Q8IYW2 2715 aa6.46□□□□□ -1.38
VRK3-220ENST00000600259 BPTFQ12830 3046 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 ADAMTS20P59510 1910 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 ADAMTS9Q9P2N4 1935 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 A0A1B0GTW7 788 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 VPS37CA5D8V6 355 aaPredicted RBP6.45□□□□□ -1.38
VRK3-220ENST00000600259 LRRIQ3A6PVS8 624 aaPredicted RBP6.45□□□□□ -1.38
VRK3-220ENST00000600259 METTL12A8MUP2 240 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 NEDD8-MDP1E9PL57 170 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 MDM4O15151 490 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 STC2O76061 302 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 PENKP01210 267 aaPredicted RBP6.45□□□□□ -1.38
VRK3-220ENST00000600259 IGLV3-19P01714 112 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 NEFLP07196 543 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 ATXN1LP0C7T5 689 aaKnown RBP6.45□□□□□ -1.38
VRK3-220ENST00000600259 ZNF883P0CG24 379 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 CCDC130P13994 396 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 CASP1P29466 404 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 CD6P30203 668 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 ATP5C1P36542 298 aaKnown RBP6.45□□□□□ -1.38
VRK3-220ENST00000600259 TXLNAP40222 546 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 PLA2G4AP47712 749 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 DGKGP49619 791 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 CYP2J2P51589 502 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 COPAP53621 1224 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 DLG4P78352 724 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 TRPC3Q13507 836 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 GEN1Q17RS7 908 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 SYCP2LQ5T4T6 812 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 FYB2Q5VWT5 728 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 TMEM215Q68D42 235 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 SHC4Q6S5L8 630 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 TPGS1Q6ZTW0 290 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 CLEC20AQ6ZU45 233 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 NUDT18Q6ZVK8 323 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 STXBP4Q6ZWJ1 553 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 MARCH9Q86YJ5 346 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 NELFCDQ8IXH7 590 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 C12orf29Q8N999 325 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 CADM4Q8NFZ8 388 aa6.45□□□□□ -1.38
VRK3-220ENST00000600259 MDM1Q8TC05 714 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms