RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 AMPD3Q01432 767 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 SCAPQ12770 1279 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 TRIP6Q15654 476 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 E2F4Q16254 413 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 ZNF423Q2M1K9 1284 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 GRAMD4Q6IC98 578 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 STXBP4Q6ZWJ1 553 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 CHPFQ8IZ52 775 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 FUKQ8N0W3 1084 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 PNPLA1Q8N8W4 532 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 SMOQ99835 787 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 MED10Q9BTT4 135 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 KLF16Q9BXK1 252 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 SDCBP2Q9H190 292 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 GOLPH3LQ9H4A5 285 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 DNAJC17Q9NVM6 304 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 KBTBD4Q9NVX7 518 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 ASXL3Q9C0F0 2248 aa17.4■□□□□ 0.38
SHKBP1-215ENST00000597649 SETXQ7Z333 2677 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 FAM237AA0A1B0GTK4 181 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 NEDD8-MDP1E9PL57 170 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 EIF3DO15371 548 aaKnown RBP eCLIP17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 ZNF217O75362 1048 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 ATICP31939 592 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 CASP4P49662 377 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 TRPC3Q13507 836 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 PREPLQ4J6C6 727 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 C19orf48Q6RUI8 117 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 RABEPKQ7Z6M1 372 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 NELFCDQ8IXH7 590 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 XXYLT1Q8NBI6 393 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 SCFD1Q8WVM8 642 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 MRGPRX1Q96LB2 322 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 MAGEF1Q9HAY2 307 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 DMAP1Q9NPF5 467 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 OSER1Q9NX31 292 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 CACNA2D2Q9NY47 1150 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 SERTAD1Q9UHV2 236 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 GPSM3Q9Y4H4 160 aa17.39■□□□□ 0.37
SHKBP1-215ENST00000597649 CACNG3O60359 315 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 TLR5O60602 858 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 AP1G2O75843 785 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 ZNF202O95125 648 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 SYPP08247 313 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 SLFN14P0C7P3 912 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 TYRP14679 529 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 RDXP35241 583 aaKnown RBP17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 SLC14A1Q13336 389 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 HNRNPDQ14103 355 aaKnown RBP17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 PLEKHG6Q3KR16 790 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 TPGS1Q6ZTW0 290 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 NUDT18Q6ZVK8 323 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 ACOT1Q86TX2 421 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 RGL4Q8IZJ4 473 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 ADAMTS14Q8WXS8 1223 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 BBS2Q9BXC9 721 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 TNMDQ9H2S6 317 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 VRTNQ9H8Y1 702 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 COMMD8Q9NX08 183 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 MARK1Q9P0L2 795 aa17.38■□□□□ 0.37
SHKBP1-215ENST00000597649 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 FTH1P19P0C7X4 201 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 CCDC130P13994 396 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 EHHADHQ08426 723 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 ORC1Q13415 861 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 FAM26FQ5R3K3 315 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 SDE2Q6IQ49 451 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 SCARA5Q6ZMJ2 495 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 CCNI2Q6ZMN8 369 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 SLCO6A1Q86UG4 719 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 SYAP1Q96A49 352 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 SMARCD1Q96GM5 515 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 KRT82Q9NSB4 513 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 LMBRD1Q9NUN5 540 aa17.37■□□□□ 0.37
SHKBP1-215ENST00000597649 CBFA2T3O75081 653 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 VNN1O95497 513 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 C4BPAP04003 597 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 CASP1P29466 404 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 AFMP43652 599 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 MAP3K7CLP57077 242 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 ASIC1P78348 528 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 GRIK2Q13002 908 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 SOWAHCQ53LP3 525 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 CNNM4Q6P4Q7 775 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 KRBA2Q6ZNG9 492 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 GPRIN1Q7Z2K8 1008 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 NAXDQ8IW45 347 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 FMR1NBQ8N0W7 255 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 SLC2A14Q8TDB8 520 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 BHMTQ93088 406 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 XPO6Q96QU8 1125 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 NACA2Q9H009 215 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 FAM124BQ9H5Z6 455 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 IL21RQ9HBE5 538 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 CSNK1G1Q9HCP0 422 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 WDR35Q9P2L0 1181 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 HMGXB4Q9UGU5 601 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 FBXO10Q9UK96 956 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 NUDT5Q9UKK9 219 aa17.36■□□□□ 0.37
SHKBP1-215ENST00000597649 ATP8B3O60423 1300 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms