RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PEX5P50542 639 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 RWDD2BP57060 319 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 DEUP1Q05D60 604 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 DUSP6Q16828 381 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 LRIT3Q3SXY7 679 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 RAB6CQ53S08 254 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 ELMSAN1Q6PJG2 1045 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 BNIPLQ7Z465 357 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 POLNQ7Z5Q5 900 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 TAC4Q86UU9 113 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 ADAM32Q8TC27 787 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 HDAC7Q8WUI4 952 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 ALG3Q92685 438 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 PGAP3Q96FM1 320 aaPredicted RBP15.29■□□□□ 0.04
VRK3-212ENST00000596814 RAB6CQ9H0N0 254 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 SMOC2Q9H3U7 446 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 TLE6Q9H808 572 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.29■□□□□ 0.04
VRK3-212ENST00000596814 DDIT4Q9NX09 232 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 PCSK1NQ9UHG2 260 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 DPP7Q9UHL4 492 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 HCFC2Q9Y5Z7 792 aa15.29■□□□□ 0.04
VRK3-212ENST00000596814 OBSL1O75147 1896 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 SYNJ2BP-COX16A0A087WUM0 186 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 SRGAP2O75044 1071 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 ZMYND10O75800 440 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 ENDOD1O94919 500 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 TRUB2O95900 331 aaKnown RBP15.28■□□□□ 0.04
VRK3-212ENST00000596814 KRT7P08729 469 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 RARGP13631 454 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 IL1R2P27930 398 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 HOXA9P31269 272 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 ATXN1P54253 815 aaKnown RBP15.28■□□□□ 0.04
VRK3-212ENST00000596814 NME3Q13232 169 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 ZFYVE27Q5T4F4 411 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 DCAF12L1Q5VU92 463 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 MSANTD2Q6P1R3 559 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 SCYL2Q6P3W7 929 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 PPP2R3CQ969Q6 453 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 PBKQ96KB5 322 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 PEBP4Q96S96 227 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 CARD9Q9H257 536 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 ZNF576Q9H609 170 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 ZWILCHQ9H900 591 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 OLA1Q9NTK5 396 aaKnown RBP15.28■□□□□ 0.04
VRK3-212ENST00000596814 TRPM5Q9NZQ8 1165 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 COX16Q9P0S2 106 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 CALCOCO1Q9P1Z2 691 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 MRFAP1Q9Y605 127 aa15.28■□□□□ 0.04
VRK3-212ENST00000596814 TRANK1O15050 2925 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 ANAPC1Q9H1A4 1944 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 CES2O00748 559 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 CCL16O15467 120 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 TADA3O75528 432 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 F9P00740 461 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 IGLV3-25P01717 112 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 PPP3CCP48454 512 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 NRIP1P48552 1158 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 TUBB2AQ13885 445 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 SMTNL2Q2TAL5 461 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 SNX30Q5VWJ9 437 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 TXNRD3NBQ6F5E7 133 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 FAM131BQ86XD5 332 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 KATNAL2Q8IYT4 538 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 COG1Q8WTW3 980 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 CDK5RAP1Q96SZ6 601 aaKnown RBP15.27■□□□□ 0.04
VRK3-212ENST00000596814 CDCA3Q99618 268 aaPredicted RBP15.27■□□□□ 0.04
VRK3-212ENST00000596814 TUBB2BQ9BVA1 445 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 ZNF334Q9HCZ1 680 aaPredicted RBP15.27■□□□□ 0.04
VRK3-212ENST00000596814 PIGVQ9NUD9 493 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 DDX56Q9NY93 547 aaKnown RBP15.27■□□□□ 0.04
VRK3-212ENST00000596814 CDC23Q9UJX2 597 aa15.27■□□□□ 0.04
VRK3-212ENST00000596814 ZNF840PA6NDX5 716 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 SPDYE4A6NLX3 237 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 ZNF185O15231 689 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 IRAK2O43187 625 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 TLR5O60602 858 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 RFPL2O75678 378 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 KRT1P04264 644 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 HNRNPA1P09651 372 aaKnown RBP eCLIP15.26■□□□□ 0.03
VRK3-212ENST00000596814 GBP1P32455 592 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 CYP4V2Q6ZWL3 525 aaPredicted RBP15.26■□□□□ 0.03
VRK3-212ENST00000596814 SND1Q7KZF4 910 aaKnown RBP eCLIP15.26■□□□□ 0.03
VRK3-212ENST00000596814 TADA2BQ86TJ2 420 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 CASP10Q92851 521 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 CAPZA3Q96KX2 299 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 SERPINB11Q96P15 392 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 KLHL11Q9NVR0 708 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 ZDHHC7Q9NXF8 308 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 NUDT5Q9UKK9 219 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 COLQQ9Y215 455 aaPredicted RBP15.26■□□□□ 0.03
VRK3-212ENST00000596814 DENND4CQ5VZ89 1909 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 ZNF211Q13398 564 aaPredicted RBP15.26■□□□□ 0.03
VRK3-212ENST00000596814 ATP13A4Q4VNC1 1196 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 PABPC1LQ4VXU2 614 aaKnown RBP15.26■□□□□ 0.03
VRK3-212ENST00000596814 ODF2Q5BJF6 829 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 KCNT1Q5JUK3 1230 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 C10orf120Q5SQS8 335 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 SEL1L2Q5TEA6 688 aa15.26■□□□□ 0.03
VRK3-212ENST00000596814 TMC8Q8IU68 726 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms