RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	BPIFB1	Q8TDL5	484 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	5.38	□□□□□ -1.55
SS18-223	ENST00000583595	WDR60	Q8WVS4	1066 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	CPT1B	Q92523	772 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	CUL5	Q93034	780 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	LRIG1	Q96JA1	1093 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	ZBTB45	Q96K62	511 aa	Predicted RBP	5.38	□□□□□ -1.55
SS18-223	ENST00000583595	CDK5RAP1	Q96SZ6	601 aa	Known RBP	5.38	□□□□□ -1.55
SS18-223	ENST00000583595	YME1L1	Q96TA2	773 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	MXD3	Q9BW11	206 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	TLR10	Q9BXR5	811 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	PNN	Q9H307	717 aa	Known RBP	5.38	□□□□□ -1.55
SS18-223	ENST00000583595	TMPRSS5	Q9H3S3	457 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	FAM83D	Q9H4H8	585 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	PLEKHA2	Q9HB19	425 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	VSX1	Q9NZR4	365 aa	Predicted RBP	5.38	□□□□□ -1.55
SS18-223	ENST00000583595	RPS6KA6	Q9UK32	745 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	TSC22D4	Q9Y3Q8	395 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	TCAF1	Q9Y4C2	921 aa		5.38	□□□□□ -1.55
SS18-223	ENST00000583595	POLRMT	O00411	1230 aa	Known RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	FOXS1	O43638	330 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	DKC1	O60832	514 aa	Known RBP eCLIP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	MLYCD	O95822	493 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	CHEK2	O96017	543 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	F9	P00740	461 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	TFRC	P02786	760 aa	Known RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	CLTB	P09497	229 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	SNRPA1	P09661	255 aa	Known RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	UBL4A	P11441	157 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	HGF	P14210	728 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	OAS2	P29728	719 aa	Known RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	SLC5A2	P31639	672 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	ACSL1	P33121	698 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	MLH1	P40692	756 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	PAFAH1B1	P43034	410 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	ZNF134	P52741	427 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	RAC3	P60763	192 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	TCF15	Q12870	199 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	FAM214A	Q32MH5	1076 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	MGAT5B	Q3V5L5	792 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	ZMAT1	Q5H9K5	638 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	ANO7	Q6IWH7	933 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	ATF7IP	Q6VMQ6	1270 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	SPRED1	Q7Z699	444 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	TAX1BP1	Q86VP1	789 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	TEX11	Q8IYF3	940 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	USP38	Q8NB14	1042 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	DNAJB14	Q8TBM8	379 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	USP6NL	Q92738	828 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	FRAT1	Q92837	279 aa	Predicted RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	ATP6V1E2	Q96A05	226 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	NSUN4	Q96CB9	384 aa	Known RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	RBM17	Q96I25	401 aa	Known RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	MAP7D2	Q96T17	732 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	MPHOSPH8	Q99549	860 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	PHF7	Q9BWX1	381 aa	Predicted RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	ARHGAP39	Q9C0H5	1083 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	SIK2	Q9H0K1	926 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	EPC1	Q9H2F5	836 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	SPON1	Q9HCB6	807 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	GBA2	Q9HCG7	927 aa	Predicted RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	NDUFAF4	Q9P032	175 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	TBC1D14	Q9P2M4	693 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	ZNF215	Q9UL58	517 aa	Predicted RBP	5.37	□□□□□ -1.55
SS18-223	ENST00000583595	USP22	Q9UPT9	525 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	CEP164	Q9UPV0	1460 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	KIF21A	Q7Z4S6	1674 aa		5.37	□□□□□ -1.55
SS18-223	ENST00000583595	AGPS	O00116	658 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	NRP1	O14786	923 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	PJA2	O43164	708 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	HOXA3	O43365	443 aa	Predicted RBP	5.36	□□□□□ -1.55
SS18-223	ENST00000583595	TSPAN3	O60637	253 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	SRGAP2	O75044	1071 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	ACADM	P11310	421 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	ALAS1	P13196	640 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	SELENOP	P49908	381 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	DGKE	P52429	567 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	NPEPPS	P55786	919 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	ZXDA	P98168	799 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	CREB5	Q02930	508 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	MPP3	Q13368	585 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	MAMLD1	Q13495	774 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	WTAP	Q15007	396 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	CSRP2	Q16527	193 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	BMT2	Q1RMZ1	405 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	RNF151	Q2KHN1	245 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	NRN1L	Q496H8	165 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	NOMO2	Q5JPE7	1267 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	AGBL4	Q5VU57	503 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	RPUSD3	Q6P087	351 aa	Known RBP	5.36	□□□□□ -1.55
SS18-223	ENST00000583595	USP30	Q70CQ3	517 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	LRRC8D	Q7L1W4	858 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	ADGRE4P	Q86SQ3	457 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	PALM2	Q8IXS6	379 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	CFAP52	Q8N1V2	620 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	ABHD5	Q8WTS1	349 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	LPP	Q93052	612 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	KTI12	Q96EK9	354 aa	Predicted RBP	5.36	□□□□□ -1.55
SS18-223	ENST00000583595	MOGAT1	Q96PD6	335 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	BAG1	Q99933	345 aa	Predicted RBP	5.36	□□□□□ -1.55

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