RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SLC47A2Q86VL8 602 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 KIAA1958Q8N8K9 716 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 OTUB2Q96DC9 234 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 NOX5Q96PH1 765 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 SPAG5Q96R06 1193 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 CHRDQ9H2X0 955 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 SYNCQ9H7C4 482 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 NLRC4Q9NPP4 1024 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 ABCC13Q9NSE7 274 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 FANCMQ8IYD8 2048 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 FAM170AA1A519 330 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 PLA2G5P39877 138 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 GALK1P51570 392 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 TPM4P67936 248 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 CSTF1Q05048 431 aaKnown RBP20.4■□□□□ 0.86
SS18-209ENST00000578595 KDSRQ06136 332 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 SKOR2Q2VWA4 1001 aaPredicted RBP20.4■□□□□ 0.86
SS18-209ENST00000578595 TAF3Q5VWG9 929 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 FSTL4Q6MZW2 842 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 TPGS1Q6ZTW0 290 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 ADGRG2Q8IZP9 1017 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 NEK11Q8NG66 645 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 IRGQQ8WZA9 623 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 BPIFA3Q9BQP9 254 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 PLCB1Q9NQ66 1216 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 SFMBT1Q9UHJ3 866 aa20.4■□□□□ 0.86
SS18-209ENST00000578595 E5RJQ4 531 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 TRDMT1O14717 391 aaKnown RBP20.39■□□□□ 0.85
SS18-209ENST00000578595 SART1O43290 800 aaKnown RBP20.39■□□□□ 0.85
SS18-209ENST00000578595 STC2O76061 302 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 EGFP01133 1207 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 ZNF18P17022 549 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 CORO1AP31146 461 aaKnown RBP20.39■□□□□ 0.85
SS18-209ENST00000578595 CLCN1P35523 988 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 GAD2Q05329 585 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 PDCLQ13371 301 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 PPP2R5DQ14738 602 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 MEA1Q16626 185 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 TMEM196Q5HYL7 178 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 BHLHA9Q7RTU4 235 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 FMNL3Q8IVF7 1028 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 DHX40Q8IX18 779 aaKnown RBP20.39■□□□□ 0.85
SS18-209ENST00000578595 SCUBE3Q8IX30 993 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 NAT16Q8N8M0 369 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 C1orf131Q8NDD1 294 aaKnown RBP20.39■□□□□ 0.85
SS18-209ENST00000578595 IPO4Q8TEX9 1081 aaKnown RBP20.39■□□□□ 0.85
SS18-209ENST00000578595 BHMTQ93088 406 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 GANQ9H2C0 597 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 SPHK2Q9NRA0 654 aa20.39■□□□□ 0.85
SS18-209ENST00000578595 NEDD8-MDP1E9PL57 170 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 F8VZ95 297 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 CAPN9O14815 690 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 GABBR2O75899 941 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 GFPT2O94808 682 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 NCAM1P13591 858 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 DRD1P21728 446 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 CCR3P51677 355 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 FZD5Q13467 585 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 CCINQ13939 588 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 FILIP1LQ4L180 1135 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 DPY19L2P1Q6NXN4 242 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 RHBDF2Q6PJF5 856 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 TSSK4Q6SA08 328 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 HTR3DQ70Z44 454 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 FAM71AQ8IYT1 594 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 ZNF687Q8N1G0 1237 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 SCML4Q8N228 414 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 ZNF276Q8N554 614 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 IER2Q9BTL4 223 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 BBS2Q9BXC9 721 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 STK33Q9BYT3 514 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 DCLK3Q9C098 648 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 CYTH4Q9UIA0 394 aa20.38■□□□□ 0.85
SS18-209ENST00000578595 MSI1O43347 362 aaKnown RBP20.37■□□□□ 0.85
SS18-209ENST00000578595 RNF40O75150 1001 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 CYP11B1P15538 503 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 OPRD1P41143 372 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 SEC13P55735 322 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 TMEM25Q86YD3 366 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 DENND1CQ8IV53 801 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 PLD4Q96BZ4 506 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 PPP1R13BQ96KQ4 1090 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 FUCA2Q9BTY2 467 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 SLC4A5Q9BY07 1137 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 HSD3B7Q9H2F3 369 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 FBRSL1Q9HCM7 1045 aaKnown RBP20.37■□□□□ 0.85
SS18-209ENST00000578595 PCDHGC3Q9UN70 934 aa20.37■□□□□ 0.85
SS18-209ENST00000578595 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.36■□□□□ 0.85
SS18-209ENST00000578595 APODP05090 189 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 SP9P0CG40 484 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 CXCL12P48061 93 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 SLC6A11P48066 632 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 HARS2P49590 506 aaKnown RBP20.36■□□□□ 0.85
SS18-209ENST00000578595 ZSCAN23Q3MJ62 389 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 OR6B2Q6IFH4 312 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 CACNA2D4Q7Z3S7 1137 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 C12orf40Q86WS4 652 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 SYNPOQ8N3V7 929 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 SPEM1Q8N4L4 309 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 STK32AQ8WU08 396 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms