RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 BTBD2Q9BX70 525 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 TXLNGYQ9BZA5 131 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 TRPS1Q9UHF7 1281 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 PCDHGB4Q9UN71 923 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 ACTL7AQ9Y615 435 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 TECTAO75443 2155 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 CENPJQ9HC77 1338 aaPredicted RBP6.34□□□□□ -1.39
VPS53-219ENST00000576019 C9orf172C9J069 976 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 PCDH17O14917 1159 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 EFEMP2O95967 443 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 CLTBP09497 229 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 CSF1P09603 554 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 ZGLP1P0C6A0 271 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 MTHFD1P11586 935 aaKnown RBP6.34□□□□□ -1.39
VPS53-219ENST00000576019 PORP16435 677 aaPredicted RBP6.34□□□□□ -1.39
VPS53-219ENST00000576019 KCNC1P48547 511 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 CCT4P50991 539 aaKnown RBP6.34□□□□□ -1.39
VPS53-219ENST00000576019 CTXN1P60606 82 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 DLG4P78352 724 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 KRT83P78385 493 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 CD83Q01151 205 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 CDC16Q13042 620 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 BTBD16Q32M84 506 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 KANK2Q63ZY3 851 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 SLC22A25Q6T423 547 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 C17orf99Q6UX52 265 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 LIPIQ6XZB0 460 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 FAM47EQ6ZV65 393 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 PROSER1Q86XN7 944 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 GALNT13Q8IUC8 556 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 NGEFQ8N5V2 710 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 BEND7Q8N7W2 519 aaPredicted RBP6.34□□□□□ -1.39
VPS53-219ENST00000576019 OR6Y1Q8NGX8 325 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 SSH3Q8TE77 659 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 CREB3L4Q8TEY5 395 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 TBC1D22AQ8WUA7 517 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 ATRIPQ8WXE1 791 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 FSD1Q9BTV5 496 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 MXD3Q9BW11 206 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 PRDM13Q9H4Q3 707 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 CHODLQ9H9P2 273 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 BCO1Q9HAY6 547 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 TMEM140Q9NV12 185 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 NUDT5Q9UKK9 219 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 ZDHHC8Q9ULC8 765 aa6.34□□□□□ -1.39
VPS53-219ENST00000576019 RRP7AQ9Y3A4 280 aaKnown RBP6.34□□□□□ -1.39
VPS53-219ENST00000576019 RTL9Q8NET4 1388 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 hCG_1807616A0A1W2PRN6 198 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 SMTNL1A8MU46 457 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 WNT10BO00744 389 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 GJB3O75712 270 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 MTA2O94776 668 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 TMEM63AO94886 807 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 MLYCDO95822 493 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 GNAI3P08754 354 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 ENO2P09104 434 aaPredicted RBP6.33□□□□□ -1.4
VPS53-219ENST00000576019 SBK3P0C264 359 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 SPATA31C1P0DKV0 1188 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 CKBP12277 381 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 FBLN1P23142 703 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 KLRK1P26718 216 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 AKT1P31749 480 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 SLC11A2P49281 568 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 ALDH18A1P54886 795 aaKnown RBP6.33□□□□□ -1.4
VPS53-219ENST00000576019 UCP3P55916 312 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 GNAI1P63096 354 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 CYP4F8P98187 520 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 PLIN5Q00G26 463 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 RALGPS1Q5JS13 557 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 HECTD3Q5T447 861 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 TEPPQ6URK8 271 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 ZDHHC24Q6UX98 284 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 TMC5Q6UXY8 1006 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 TMTC3Q6ZXV5 915 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 VSIG1Q86XK7 387 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 TMEM151AQ8N4L1 468 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 IGDCC4Q8TDY8 1250 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 BCL7CQ8WUZ0 217 aaPredicted RBP6.33□□□□□ -1.4
VPS53-219ENST00000576019 SPSB4Q96A44 273 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 C3orf49Q96BT1 292 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 PEX11GQ96HA9 241 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 YME1L1Q96TA2 773 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 REEP2Q9BRK0 252 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 TWSG1Q9GZX9 223 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 ADAMTS10Q9H324 1103 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 TP63Q9H3D4 680 aaPredicted RBP6.33□□□□□ -1.4
VPS53-219ENST00000576019 ABHD16BQ9H3Z7 469 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 SLAMF8Q9P0V8 285 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 RPS6KA6Q9UK32 745 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 MKL2Q9ULH7 1088 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 DAPP1Q9UN19 280 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 FZD1Q9UP38 647 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 PAXBP1Q9Y5B6 917 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 SNX5Q9Y5X3 404 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 CYP46A1Q9Y6A2 500 aa6.33□□□□□ -1.4
VPS53-219ENST00000576019 DDX60Q8IY21 1712 aaKnown RBP6.33□□□□□ -1.4
VPS53-219ENST00000576019 EDC4Q6P2E9 1401 aaKnown RBP6.33□□□□□ -1.4
VPS53-219ENST00000576019 EP300Q09472 2414 aaPredicted RBP6.33□□□□□ -1.4
VPS53-219ENST00000576019 PLXNA1Q9UIW2 1896 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 DUOX1Q9NRD9 1551 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms