RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 TUBGCP4Q9UGJ1 667 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 SHOC2Q9UQ13 582 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 RBMX2Q9Y388 322 aaKnown RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 MRPL11Q9Y3B7 192 aaKnown RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 SLC18A1P54219 525 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 NUP107P57740 925 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 NRF1Q16656 503 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 DUS1LQ6P1R4 473 aaKnown RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 ANKS1BQ7Z6G8 1248 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 SMYD1Q8NB12 490 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TTC13Q8NBP0 860 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 CATSPER1Q8NEC5 780 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 FNDC8Q8TC99 324 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TRPV6Q9H1D0 765 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 PXMP2Q9NR77 195 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 SAE1Q9UBE0 346 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 CLEC11AQ9Y240 323 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 AFG3L2Q9Y4W6 797 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 PLXNA1Q9UIW2 1896 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 PROSCO94903 275 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TGDSO95455 350 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 SNRPAP09012 282 aaKnown RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 ENO3P13929 434 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 ENTPD1P49961 510 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TAS2R40P59535 323 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 MROH9Q5TGP6 573 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 KRT39Q6A163 491 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 MFSD7Q6UXD7 560 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 NIPA1Q7RTP0 329 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TMC7Q7Z402 723 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 PPIL6Q8IXY8 311 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 PQLC1Q8N2U9 271 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 BANPQ8N9N5 519 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TSPAN14Q8NG11 270 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 NACC1Q96RE7 527 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 FERMT1Q9BQL6 677 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TMEM206Q9H813 350 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TRIM17Q9Y577 477 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 PCDHB4Q9Y5E5 795 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 CYB561D2O14569 222 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 P4HA2O15460 535 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 KRT38O76015 456 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 NUDT2P50583 147 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 XIAPP98170 497 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 OTUD4Q01804 1114 aaKnown RBP9.9□□□□□ -0.82
CCDC40-212ENST00000574799 TRPC3Q13507 836 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 EFHC2Q5JST6 749 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 TMEM53Q6P2H8 277 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 TMEM110Q86TL2 294 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 RFX6Q8HWS3 928 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 PRICKLE1Q96MT3 831 aaPredicted RBP9.9□□□□□ -0.82
CCDC40-212ENST00000574799 RIT2Q99578 217 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 EBF4Q9BQW3 602 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 CALN1Q9BXU9 219 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 NDEL1Q9GZM8 345 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 XAB2Q9HCS7 855 aaKnown RBP9.9□□□□□ -0.82
CCDC40-212ENST00000574799 PDLIM7Q9NR12 457 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 TRNAU1APQ9NX07 287 aaKnown RBP9.9□□□□□ -0.82
CCDC40-212ENST00000574799 HSPBP1Q9NZL4 362 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 HSFX1Q9UBD0 423 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 WDR64B1ANS9 1081 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 H7C0C1 242 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 PDGFRBP09619 1106 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 NFKBIAP25963 317 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 ELK3P41970 407 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 STT3AP46977 705 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 ATP5OP48047 213 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 RARRES1P49788 294 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 ART3Q13508 389 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 TLR1Q15399 786 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 ADRM1Q16186 407 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 BSPRYQ5W0U4 402 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 RNF169Q8NCN4 708 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 FAF2Q96CS3 445 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 BTBD9Q96Q07 612 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 PDCD2LQ9BRP1 358 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 DRC3Q9H069 523 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 ACSS3Q9H6R3 686 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 EURLQ9NYK6 297 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 GPRC5DQ9NZD1 345 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 SEL1LQ9UBV2 794 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 RABGEF1Q9UJ41 708 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 ARHGAP26Q9UNA1 814 aa9.9□□□□□ -0.82
CCDC40-212ENST00000574799 HEMK1Q9Y5R4 338 aaPredicted RBP9.9□□□□□ -0.82
CCDC40-212ENST00000574799 ARHGEF37A1IGU5 675 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 LIASO43766 372 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 KCNA2P16389 499 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 VCPP55072 806 aaKnown RBP9.9□□□□□ -0.83
CCDC40-212ENST00000574799 C21orf59P57076 290 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 SULT2A1Q06520 285 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 DMPKQ09013 629 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 PRKD1Q15139 912 aaPredicted RBP9.9□□□□□ -0.83
CCDC40-212ENST00000574799 BRDTQ58F21 947 aaPredicted RBP9.9□□□□□ -0.83
CCDC40-212ENST00000574799 DNAJC24Q6P3W2 148 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 DARS2Q6PI48 645 aaKnown RBP9.9□□□□□ -0.83
CCDC40-212ENST00000574799 PACS1Q6VY07 963 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 GPR141Q7Z602 305 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 NLRX1Q86UT6 975 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 RCOR2Q8IZ40 523 aa9.9□□□□□ -0.83
CCDC40-212ENST00000574799 MCOLN2Q8IZK6 566 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms