RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 POPDC2Q9HBU9 364 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 ABCC13Q9NSE7 274 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 OLA1Q9NTK5 396 aaKnown RBP6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 TMEM30AQ9NV96 361 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 RRN3Q9NYV6 651 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 TRPM5Q9NZQ8 1165 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 GMIPQ9P107 970 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 TJP2Q9UDY2 1190 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 TRIM10Q9UDY6 481 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 CHORDC1Q9UHD1 332 aaPredicted RBP6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 IP6K2Q9UHH9 426 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 SCML2Q9UQR0 700 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 PAXBP1Q9Y5B6 917 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 SCN1AP35498 2009 aa6.89□□□□□ -1.31
CTDNEP1-204ENST00000570484 SYNJ2BP-COX16A0A087WUM0 186 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 A0A1W2PQH9 124 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 SIGLEC16A6NMB1 481 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 USP27XA6NNY8 438 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 KIF2AO00139 706 aaPredicted RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 TNFRSF10BO14763 440 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 NCK2O43639 380 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 RFPL2O75678 378 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 RNF8O76064 485 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 GJB6O95452 261 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 POU2F2P09086 479 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 MYL4P12829 197 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 PDGFRAP16234 1089 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 GABRR2P28476 465 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 GBP1P32455 592 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 GJC1P36383 396 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 ARHGAP25P42331 645 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 MATKP42679 507 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 ABL2P42684 1182 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 PPP3CCP48454 512 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 RPL34P49207 117 aaKnown RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 SKOR1P84550 965 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 TAF10Q12962 218 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 PTP4A2Q12974 167 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 NR1H3Q13133 447 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 MTMR3Q13615 1198 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 PIGHQ14442 188 aaPredicted RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 MESDQ14696 234 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 GRIN2CQ14957 1233 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 CDO1Q16878 200 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 PABPC1LQ4VXU2 614 aaKnown RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 DCAF6Q58WW2 860 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 C4orf48Q5BLP8 95 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 C10orf120Q5SQS8 335 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 LILRA6Q6PI73 481 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 ZNF662Q6ZS27 426 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 MON1AQ86VX9 555 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 C17orf53Q8N3J3 647 aaPredicted RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 RNF10Q8N5U6 811 aaKnown RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 EMC1Q8N766 993 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 EFHBQ8N7U6 833 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 FNIP1Q8TF40 1166 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 SLC22A17Q8WUG5 538 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 SMG7Q92540 1137 aaKnown RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 EDEM1Q92611 657 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 RNF34Q969K3 372 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 PIWIL1Q96J94 861 aaKnown RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 C16orf45Q96MC5 204 aaPredicted RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 SERPINB11Q96P15 392 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 NCAPGQ9BPX3 1015 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 CORO1BQ9BR76 489 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 TTLL2Q9BWV7 592 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 LACRTQ9GZZ8 138 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 TTYH1Q9H313 450 aaPredicted RBP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 TRPC7Q9HCX4 862 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 OSGEPQ9NPF4 335 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 CLDND1Q9NY35 253 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 COX16Q9P0S2 106 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 RASAL2Q9UJF2 1139 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 TFR2Q9UP52 801 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 USTQ9Y2C2 406 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 USP3Q9Y6I4 520 aa6.88□□□□□ -1.31
CTDNEP1-204ENST00000570484 NLRC5Q86WI3 1866 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 CCDC195A0A1B0GUA6 201 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 TMEM191CA6NGB0 347 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 YJEFN3A6XGL0 299 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 ESPNB1AK53 854 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 E7ENQ6 273 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 SOX1O00570 391 aaPredicted RBP6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 ZNF197O14709 1029 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 ZBTB24O43167 697 aaPredicted RBP6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 PRPSAP2O60256 369 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 TLR5O60602 858 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 PALMO75781 387 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 MTA2O94776 668 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 PROSCO94903 275 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 APOEP02649 317 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 CKMP06732 381 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 RHOP08100 348 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 FBXO45P0C2W1 286 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 RARGP13631 454 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 FOSL2P15408 326 aa6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 HOXB8P17481 243 aaPredicted RBP6.87□□□□□ -1.31
CTDNEP1-204ENST00000570484 PTPN2P17706 415 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms