RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 IER2Q9BTL4 223 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 TMEM63CQ9P1W3 806 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 RALYQ9UKM9 306 aaKnown RBP15.78■□□□□ 0.12
VPS39-210ENST00000568357 SPTBN2O15020 2390 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 YJEFN3A6XGL0 299 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 E7ENQ6 273 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 DRD1P21728 446 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 EEF1GP26641 437 aaKnown RBP15.77■□□□□ 0.12
VPS39-210ENST00000568357 GPD2P43304 727 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 EFEMP1Q12805 493 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 LY6G5CQ5SRR4 150 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 CCDC183Q5T5S1 534 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 CDKAL1Q5VV42 579 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 DENND1BQ6P3S1 775 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 TADA2BQ86TJ2 420 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 TMEM25Q86YD3 366 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 MIB1Q86YT6 1006 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 ZNF606Q8WXB4 792 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 SHC3Q92529 594 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 OTUB2Q96DC9 234 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 FAM81BQ96LP2 452 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 FANCLQ9NW38 375 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 DNAJC12Q9UKB3 198 aa15.77■□□□□ 0.12
VPS39-210ENST00000568357 USP24Q9UPU5 2620 aa15.77■□□□□ 0.11
VPS39-210ENST00000568357 CACNA1IQ9P0X4 2223 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 MIA3Q5JRA6 1907 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 BAHCC1Q9P281 2608 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 ANTXRLA6NF34 631 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 FOXN3O00409 490 aaPredicted RBP15.76■□□□□ 0.11
VPS39-210ENST00000568357 STC2O76061 302 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 LETM1O95202 739 aaPredicted RBP15.76■□□□□ 0.11
VPS39-210ENST00000568357 KLKB1P03952 638 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 USP8P40818 1118 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 CCR3P51677 355 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 MESP2Q0VG99 397 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 BSPRYQ5W0U4 402 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 C12orf40Q86WS4 652 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 SIX6OS1Q8N1H7 587 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 SCML4Q8N228 414 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 HSFY1Q96LI6 401 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 CDK5RAP1Q96SZ6 601 aaKnown RBP15.76■□□□□ 0.11
VPS39-210ENST00000568357 CNGB3Q9NQW8 809 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 SPHK2Q9NRA0 654 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 POLR3BQ9NW08 1133 aaPredicted RBP15.76■□□□□ 0.11
VPS39-210ENST00000568357 ANO10Q9NW15 660 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 TAB2Q9NYJ8 693 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 RASAL2Q9UJF2 1139 aa15.76■□□□□ 0.11
VPS39-210ENST00000568357 K7EQS6 105 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 K7ESF4 209 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 RNF40O75150 1001 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 ADH1CP00326 375 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 HMBSP08397 361 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 ADH5P11766 374 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 GNA15P30679 374 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 RPL34P49207 117 aaKnown RBP15.75■□□□□ 0.11
VPS39-210ENST00000568357 DAOAP59103 153 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 GOLGA8FQ08AF8 430 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 GOLGA8DPQ0D2H9 430 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 STX1AQ16623 288 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 BTBD8Q5XKL5 378 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 Q6ZNB5 142 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 RSRC2Q7L4I2 434 aaKnown RBP15.75■□□□□ 0.11
VPS39-210ENST00000568357 SFTPA1Q8IWL2 248 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 SCUBE3Q8IX30 993 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 NAT16Q8N8M0 369 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 ZBTB44Q8NCP5 570 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 CLEC4CQ8WTT0 213 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 EDEM1Q92611 657 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 EXOC4Q96A65 974 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 ZSCAN32Q9NX65 697 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 MARCH2Q9P0N8 246 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 CYTH4Q9UIA0 394 aa15.75■□□□□ 0.11
VPS39-210ENST00000568357 GPR179Q6PRD1 2367 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 PES1O00541 588 aaKnown RBP15.74■□□□□ 0.11
VPS39-210ENST00000568357 THAP12O43422 761 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 MED7O43513 233 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 PAPSS2O95340 614 aaPredicted RBP15.74■□□□□ 0.11
VPS39-210ENST00000568357 PNMA6AP0CW24 399 aaPredicted RBP15.74■□□□□ 0.11
VPS39-210ENST00000568357 CLCN1P35523 988 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 COG7P83436 770 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 GAD2Q05329 585 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 DMWDQ09019 674 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 KRT31Q15323 416 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 ANO4Q32M45 955 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 FBXO43Q4G163 708 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 KLHDC7AQ5VTJ3 777 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 WDTC1Q8N5D0 677 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 P2RY11Q96G91 374 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 PNKPQ96T60 521 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 MIS12Q9H081 205 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 VPS16Q9H269 839 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 SFMBT1Q9UHJ3 866 aa15.74■□□□□ 0.11
VPS39-210ENST00000568357 LSM7Q9UK45 103 aaKnown RBP15.74■□□□□ 0.11
VPS39-210ENST00000568357 MYH10P35580 1976 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 HELZP42694 1942 aaKnown RBP15.73■□□□□ 0.11
VPS39-210ENST00000568357 CHD6Q8TD26 2715 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 A0A0A0MRY4 1105 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 SLC12A8A0AV02 714 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 CHURC1-FNTBB4DL54 471 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 HOXC11O43248 304 aaPredicted RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms