RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	POMGNT1	Q8WZA1	660 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	FGF11	Q92914	225 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	BHMT	Q93088	406 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	C8orf48	Q96LL4	319 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	CEP295NL	Q96MC4	621 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	FAM213A	Q9BRX8	229 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	BBS2	Q9BXC9	721 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	C6orf106	Q9H6K1	298 aa	Predicted RBP	12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	PARVG	Q9HBI0	331 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	GFRA2	O00451	464 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	PCDHGA12	O60330	932 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	BRINP1	O60477	761 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	CISD3	P0C7P0	127 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	DGKG	P49619	791 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	CCT8	P50990	548 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	POU5F1	Q01860	360 aa	Known RBP	12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	KCNH2	Q12809	1159 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	STARD3	Q14849	445 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	TMEM119	Q4V9L6	283 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	PRAMEF14	Q5SWL7	426 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	HS2ST1	Q7LGA3	356 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	GATAD2A	Q86YP4	633 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	ENGASE	Q8NFI3	743 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	MYCBPAP	Q8TBZ2	947 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	SAAL1	Q96ER3	474 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	SIPA1	Q96FS4	1042 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	P2RY11	Q96G91	374 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	TMEM176A	Q96HP8	235 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	NAF1	Q96HR8	494 aa	Known RBP	12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	XPO6	Q96QU8	1125 aa	Known RBP	12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	NUP58	Q9BVL2	599 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	NRSN2	Q9GZP1	204 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	CPNE5	Q9HCH3	593 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	TM9SF3	Q9HD45	589 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	NME7	Q9Y5B8	376 aa		12.48	□□□□□ -0.41
CLK3-222	ENST00000568232	COL5A1	P20908	1838 aa	Predicted RBP	12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	CLDN5	O00501	218 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	GREM1	O60565	184 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	SCP2	P22307	547 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	YWHAQ	P27348	245 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	OXTR	P30559	389 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	PRPH	P41219	470 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	IL12RB1	P42701	662 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	PGF	P49763	221 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	COPA	P53621	1224 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	RBP5	P82980	135 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	MAPRE1	Q15691	268 aa	Known RBP	12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	HECTD3	Q5T447	861 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	ARHGAP40	Q5TG30	622 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	HES3	Q5TGS1	186 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	LIMS2	Q7Z4I7	341 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	ERICH1	Q86X53	443 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	FBXO18	Q8NFZ0	1043 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	SCAMP5	Q8TAC9	235 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	CACTIN	Q8WUQ7	758 aa	Known RBP	12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	IGSF8	Q969P0	613 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	FBXO32	Q969P5	355 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	CDK5RAP3	Q96JB5	506 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	ZNF518B	Q9C0D4	1074 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	MTMR12	Q9C0I1	747 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	PLK2	Q9NYY3	685 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	ITGA11	Q9UKX5	1188 aa		12.47	□□□□□ -0.41
CLK3-222	ENST00000568232	GOLGA8IP	A6NC78	632 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	GOLGA8J	A6NMD2	632 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	LAD1	O00515	517 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	ENC1	O14682	589 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	SLC28A2	O43868	658 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	RFPL3	O75679	317 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	IGLV3-19	P01714	112 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	ACADM	P11310	421 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	C6	P13671	934 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	ACSL1	P33121	698 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	KCNA1	Q09470	495 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	TEAD4	Q15561	434 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	DPH6	Q7L8W6	267 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	BRSK2	Q8IWQ3	736 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	NUP93	Q8N1F7	819 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	PRCC	Q92733	491 aa	Predicted RBP	12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	KCNK16	Q96T55	309 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	DUSP9	Q99956	384 aa	Known RBP	12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	MRPL45	Q9BRJ2	306 aa	Known RBP	12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	DPEP3	Q9H4B8	488 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	PDE11A	Q9HCR9	933 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	RBAK	Q9NYW8	714 aa	Predicted RBP	12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	WDR35	Q9P2L0	1181 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	PCDHGA1	Q9Y5H4	931 aa		12.46	□□□□□ -0.41
CLK3-222	ENST00000568232	UNC79	Q9P2D8	2635 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	PTPRJ	Q12913	1337 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	TMEM131	Q92545	1883 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	VWA3A	A6NCI4	1184 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	LDOC1	O95751	146 aa	Predicted RBP	12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	TBX18	O95935	607 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	KRT18	P05783	430 aa	Known RBP	12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	WARS	P23381	471 aa	Known RBP	12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	CTSK	P43235	329 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	GRIA4	P48058	902 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	RHD	Q02161	417 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	MCM6	Q14566	821 aa		12.45	□□□□□ -0.42
CLK3-222	ENST00000568232	FBXL19	Q6PCT2	694 aa		12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms