RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 DNAJC3Q13217 504 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 PTK7Q13308 1070 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 SEMA5AQ13591 1074 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 SNX17Q15036 470 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 SLC1A5Q15758 541 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 CDO1Q16878 200 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 FAM133BQ5BKY9 247 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 UBXN11Q5T124 520 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 SH3PXD2AQ5TCZ1 1133 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 TTC39BQ5VTQ0 682 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 OLFML2BQ68BL8 750 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 SCYL2Q6P3W7 929 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 ZNF449Q6P9G9 518 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 C1orf228Q6PIY5 440 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 LVRNQ6Q4G3 990 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 CAPN12Q6ZSI9 719 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 BNIPLQ7Z465 357 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 ZC3H18Q86VM9 953 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 ECHDC2Q86YB7 292 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 CCNJLQ8IV13 435 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 ADGRF2Q8IZF7 708 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 C4orf33Q8N1A6 199 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 VPS52Q8N1B4 723 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 AGGF1Q8N302 714 aaeCLIP6.49□□□□□ -1.37
CLN3-223ENST00000566472 C12orf29Q8N999 325 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 APPL2Q8NEU8 664 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 NPLOC4Q8TAT6 608 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 RAB3IL1Q8TBN0 382 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 C10orf82Q8WW14 230 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 INPP5DQ92835 1189 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 KLHL29Q96CT2 875 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 PIWIL1Q96J94 861 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 TMEM237Q96Q45 408 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 RAB3IPQ96QF0 476 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 OSMRQ99650 979 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 HNRNPABQ99729 332 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 FERMT1Q9BQL6 677 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 SYT17Q9BSW7 474 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 TUBB6Q9BUF5 446 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 FAM49AQ9H0Q0 323 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 NXF3Q9H4D5 531 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 ECT2Q9H8V3 914 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 MLXIPLQ9NP71 852 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 ARHGEF3Q9NR81 526 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 RAB6BQ9NRW1 208 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 FAM49BQ9NUQ9 324 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 STAP1Q9ULZ2 295 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 PHTF1Q9UMS5 762 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 RPL26L1Q9UNX3 145 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 AP4E1Q9UPM8 1137 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 PIN4Q9Y237 131 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 TTLL3Q9Y4R7 772 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 NME7Q9Y5B8 376 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 RAD54BQ9Y620 910 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 POLR2AP24928 1970 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 A0A0A0MRY4 1105 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 A0A1W2PPM1 405 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 C17orf102A2RUQ5 167 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 FAM159BA6NKW6 160 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 FOXO6A8MYZ6 492 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 C2CD2LO14523 706 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 DYNC1LI2O43237 492 aaPredicted RBP6.48□□□□□ -1.37
CLN3-223ENST00000566472 KPNA6O60684 536 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 LPXNO60711 386 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 OPHN1O60890 802 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 BANF1O75531 89 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 GRAP2O75791 330 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 GABBR2O75899 941 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 DGKIO75912 1065 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 KRT38O76015 456 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 UNC5CO95185 931 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 ATP6V1G2O95670 118 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 APOEP02649 317 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 C1QAP02745 245 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 ATP5BP06576 529 aaKnown RBP6.48□□□□□ -1.37
CLN3-223ENST00000566472 SNRPAP09012 282 aaKnown RBP6.48□□□□□ -1.37
CLN3-223ENST00000566472 ZNF865P0CJ78 1059 aaPredicted RBP6.48□□□□□ -1.37
CLN3-223ENST00000566472 CCDC130P13994 396 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 ADORA2BP29275 332 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 NOS2P35228 1153 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 ETV4P43268 484 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 SULT1E1P49888 294 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 RASSF2P50749 326 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 MNAT1P51948 309 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 GAD2Q05329 585 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 EFTUD2Q15029 972 aaKnown RBP eCLIP6.48□□□□□ -1.37
CLN3-223ENST00000566472 CA9Q16790 459 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 PARP6Q2NL67 630 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 SLC25A52Q3SY17 297 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 PREPLQ4J6C6 727 aaPredicted RBP6.48□□□□□ -1.37
CLN3-223ENST00000566472 HP1BP3Q5SSJ5 553 aaPredicted RBP6.48□□□□□ -1.37
CLN3-223ENST00000566472 STEAP4Q687X5 459 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 NCBP2-AS2Q69YL0 99 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 HEATR6Q6AI08 1181 aaKnown RBP6.48□□□□□ -1.37
CLN3-223ENST00000566472 TAF2Q6P1X5 1199 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 FAM47EQ6ZV65 393 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 SH2D5Q6ZV89 423 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 ASRGL1Q7L266 308 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 TLK2Q86UE8 772 aa6.48□□□□□ -1.37
CLN3-223ENST00000566472 LRRC6Q86X45 466 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms