RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 CNTN6Q9UQ52 1028 aa19.29■□□□□ 0.68
CLN3-214ENST00000565140 PIK3R2O00459 728 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 TRIM24O15164 1050 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 TULP3O75386 442 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 APODP05090 189 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 HMBSP08397 361 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 SETSIPP0DME0 302 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 SLC9A1P19634 815 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 RGS7P49802 495 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 GOLGA8FQ08AF8 430 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 GOLGA8DPQ0D2H9 430 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 DMC1Q14565 340 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 EMC10Q5UCC4 262 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 PMF1Q6P1K2 205 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 GJB7Q6PEY0 223 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 TPGS1Q6ZTW0 290 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 SECISBP2LQ93073 1101 aaKnown RBP19.28■□□□□ 0.68
CLN3-214ENST00000565140 P2RY11Q96G91 374 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 CDK5RAP1Q96SZ6 601 aaKnown RBP19.28■□□□□ 0.68
CLN3-214ENST00000565140 ARHGEF4Q9NR80 690 aa19.28■□□□□ 0.68
CLN3-214ENST00000565140 ABCA7Q8IZY2 2146 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 YJEFN3A6XGL0 299 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 E7ENQ6 273 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 LCP1P13796 627 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 CNR2P34972 360 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 GRIA2P42262 883 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 SIM2Q14190 667 aaPredicted RBP19.27■□□□□ 0.68
CLN3-214ENST00000565140 BTBD8Q5XKL5 378 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 TRIM65Q6PJ69 517 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 PRR23BQ6ZRT6 265 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 RSRC2Q7L4I2 434 aaKnown RBP19.27■□□□□ 0.68
CLN3-214ENST00000565140 KIAA2013Q8IYS2 634 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 CCDC33Q8N5R6 958 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 CAMKK1Q8N5S9 505 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 GPT2Q8TD30 523 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 IPO9Q96P70 1041 aaKnown RBP19.27■□□□□ 0.68
CLN3-214ENST00000565140 MARCH2Q9P0N8 246 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 NCDNQ9UBB6 729 aa19.27■□□□□ 0.68
CLN3-214ENST00000565140 NEDD8-MDP1E9PL57 170 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 M0QYV0 167 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 KRT5P13647 590 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 KIR2DL1P43626 348 aaPredicted RBP19.26■□□□□ 0.67
CLN3-214ENST00000565140 MTIF2P46199 727 aaKnown RBP19.26■□□□□ 0.67
CLN3-214ENST00000565140 COG7P83436 770 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 TPD52L1Q16890 204 aaPredicted RBP19.26■□□□□ 0.67
CLN3-214ENST00000565140 BSPRYQ5W0U4 402 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 SIX6OS1Q8N1H7 587 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 CCDC26Q8TAB7 109 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 EDEM1Q92611 657 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 ACDQ96AP0 544 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 BBS2Q9BXC9 721 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 THAP9Q9H5L6 903 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 ZDHHC4Q9NPG8 344 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 ACP6Q9NPH0 428 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 DEC1Q9P2X7 70 aa19.26■□□□□ 0.67
CLN3-214ENST00000565140 CCDC163A0A0D9SF12 145 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 SLC12A8A0AV02 714 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.25■□□□□ 0.67
CLN3-214ENST00000565140 TYRP14679 529 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 PON1P27169 355 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 ERCC5P28715 1186 aaPredicted RBP19.25■□□□□ 0.67
CLN3-214ENST00000565140 CORO1AP31146 461 aaKnown RBP19.25■□□□□ 0.67
CLN3-214ENST00000565140 TIE1P35590 1138 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 TNFRSF4P43489 277 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 DAOAP59103 153 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 MRPS21P82921 87 aaKnown RBP19.25■□□□□ 0.67
CLN3-214ENST00000565140 STILQ15468 1287 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 HSP90AA4PQ58FG1 418 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 GBP6Q6ZN66 633 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 SCML4Q8N228 414 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 ALLCQ8N6M5 410 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 IL17RCQ8NAC3 791 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 BHMTQ93088 406 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 CNGB3Q9NQW8 809 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 MARK1Q9P0L2 795 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 WDR35Q9P2L0 1181 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 HCN2Q9UL51 889 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 RAB23Q9ULC3 237 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 MMP17Q9ULZ9 603 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 DNAH14Q0VDD8 3507 aa19.25■□□□□ 0.67
CLN3-214ENST00000565140 GTPBP10A4D1E9 387 aaKnown RBP19.24■□□□□ 0.67
CLN3-214ENST00000565140 TBC1D3BA6NDS4 549 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 BECN2A8MW95 431 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 CACNG3O60359 315 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 HNRNPLP14866 589 aaKnown RBP eCLIP19.24■□□□□ 0.67
CLN3-214ENST00000565140 TGM1P22735 817 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 GPD2P43304 727 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 MFAP3P55082 362 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 ARHGAP44Q17R89 818 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 EXOC3L4Q17RC7 722 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 DENND1BQ6P3S1 775 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 TMEM92Q6UXU6 159 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 FMNL3Q8IVF7 1028 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 TXNDC5Q8NBS9 432 aaKnown RBP19.24■□□□□ 0.67
CLN3-214ENST00000565140 CLEC4CQ8WTT0 213 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 GAB3Q8WWW8 586 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 DNAJC17Q9NVM6 304 aaKnown RBP19.24■□□□□ 0.67
CLN3-214ENST00000565140 PLK2Q9NYY3 685 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 SFMBT1Q9UHJ3 866 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 AGO1Q9UL18 857 aaKnown RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms