RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 BBS7Q8IWZ6 715 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 CHFRQ96EP1 664 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 VPS16Q9H269 839 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 SIX2Q9NPC8 291 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 PLCB1Q9NQ66 1216 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 PRMT8Q9NR22 394 aaPredicted RBP14.03□□□□□ -0.16
CLK3-213ENST00000563842 SPHK2Q9NRA0 654 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 ST7Q9NRC1 585 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 RBM12Q9NTZ6 932 aaKnown RBP14.03□□□□□ -0.16
CLK3-213ENST00000563842 FAM86C1Q9NVL1 165 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 TAB2Q9NYJ8 693 aa14.03□□□□□ -0.16
CLK3-213ENST00000563842 SMTNL1A8MU46 457 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 BECN2A8MW95 431 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 MDM4O15151 490 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 STC2O76061 302 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 PAPSS2O95340 614 aaPredicted RBP14.02□□□□□ -0.17
CLK3-213ENST00000563842 KRT9P35527 623 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 CHKAP35790 457 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 RPL34P49207 117 aaKnown RBP14.02□□□□□ -0.17
CLK3-213ENST00000563842 KCNMA1Q12791 1236 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 RAPGEF1Q13905 1077 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 KLHL40Q2TBA0 621 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 KLHDC7AQ5VTJ3 777 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 MAML2Q8IZL2 1156 aaPredicted RBP14.02□□□□□ -0.17
CLK3-213ENST00000563842 ATRIPQ8WXE1 791 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 PLD4Q96BZ4 506 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 NOX5Q96PH1 765 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 XPO6Q96QU8 1125 aaKnown RBP14.02□□□□□ -0.17
CLK3-213ENST00000563842 PNKPQ96T60 521 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 LSM14BQ9BX40 385 aaKnown RBP14.02□□□□□ -0.17
CLK3-213ENST00000563842 ZSCAN32Q9NX65 697 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 WDR35Q9P2L0 1181 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 PCDHGC3Q9UN70 934 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 HBS1LQ9Y450 684 aaKnown RBP14.02□□□□□ -0.17
CLK3-213ENST00000563842 CEP83Q9Y592 693 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 PCDHGA2Q9Y5H1 932 aa14.02□□□□□ -0.17
CLK3-213ENST00000563842 SPAG17Q6Q759 2223 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 SLC12A8A0AV02 714 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 YJEFN3A6XGL0 299 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 CHURC1-FNTBB4DL54 471 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 E7ENQ6 273 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 FOXN3O00409 490 aaPredicted RBP14.01□□□□□ -0.17
CLK3-213ENST00000563842 SCAMP3O14828 347 aaKnown RBP14.01□□□□□ -0.17
CLK3-213ENST00000563842 HOXC11O43248 304 aaPredicted RBP14.01□□□□□ -0.17
CLK3-213ENST00000563842 EGFP01133 1207 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 CALCAP01258 141 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 LTFP02788 710 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 APODP05090 189 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 UCHL3P15374 230 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 OPRD1P41143 372 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 COPB1P53618 953 aaKnown RBP14.01□□□□□ -0.17
CLK3-213ENST00000563842 APBA1Q02410 837 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 DRAP1Q14919 205 aaPredicted RBP14.01□□□□□ -0.17
CLK3-213ENST00000563842 ANO4Q32M45 955 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 DENND1BQ6P3S1 775 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 Q6ZNB5 142 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 BHLHA9Q7RTU4 235 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 FAM71AQ8IYT1 594 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 NKD2Q969F2 451 aaPredicted RBP14.01□□□□□ -0.17
CLK3-213ENST00000563842 ACDQ96AP0 544 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 BPIFA3Q9BQP9 254 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 SLC4A5Q9BY07 1137 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 STK33Q9BYT3 514 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 LHX5Q9H2C1 402 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 PDCL3Q9H2J4 239 aa14.01□□□□□ -0.17
CLK3-213ENST00000563842 FBRSL1Q9HCM7 1045 aaKnown RBP14.01□□□□□ -0.17
CLK3-213ENST00000563842 LIMA1Q9UHB6 759 aaKnown RBP14.01□□□□□ -0.17
CLK3-213ENST00000563842 FAM186AA6NE01 2351 aa14□□□□□ -0.17
CLK3-213ENST00000563842 LRRC10BA6NIK2 292 aa14□□□□□ -0.17
CLK3-213ENST00000563842 GREM1O60565 184 aa14□□□□□ -0.17
CLK3-213ENST00000563842 RNF40O75150 1001 aa14□□□□□ -0.17
CLK3-213ENST00000563842 CORO1AP31146 461 aaKnown RBP14□□□□□ -0.17
CLK3-213ENST00000563842 GRIA2P42262 883 aa14□□□□□ -0.17
CLK3-213ENST00000563842 HARS2P49590 506 aaKnown RBP14□□□□□ -0.17
CLK3-213ENST00000563842 GAS6Q14393 721 aa14□□□□□ -0.17
CLK3-213ENST00000563842 GAB4Q2WGN9 574 aa14□□□□□ -0.17
CLK3-213ENST00000563842 ANO6Q4KMQ2 910 aa14□□□□□ -0.17
CLK3-213ENST00000563842 MSANTD2Q6P1R3 559 aa14□□□□□ -0.17
CLK3-213ENST00000563842 Q6ZS52 159 aa14□□□□□ -0.17
CLK3-213ENST00000563842 BEND5Q7L4P6 421 aa14□□□□□ -0.17
CLK3-213ENST00000563842 TMEM110Q86TL2 294 aa14□□□□□ -0.17
CLK3-213ENST00000563842 TMEM25Q86YD3 366 aa14□□□□□ -0.17
CLK3-213ENST00000563842 FMNL3Q8IVF7 1028 aa14□□□□□ -0.17
CLK3-213ENST00000563842 AOPEPQ8N6M6 819 aa14□□□□□ -0.17
CLK3-213ENST00000563842 NDRG1Q92597 394 aaKnown RBP14□□□□□ -0.17
CLK3-213ENST00000563842 EDEM1Q92611 657 aa14□□□□□ -0.17
CLK3-213ENST00000563842 WBP2Q969T9 261 aa14□□□□□ -0.17
CLK3-213ENST00000563842 BBS2Q9BXC9 721 aa14□□□□□ -0.17
CLK3-213ENST00000563842 MIS12Q9H081 205 aa14□□□□□ -0.17
CLK3-213ENST00000563842 MARK1Q9P0L2 795 aa14□□□□□ -0.17
CLK3-213ENST00000563842 DEC1Q9P2X7 70 aa14□□□□□ -0.17
CLK3-213ENST00000563842 FHOD1Q9Y613 1164 aa14□□□□□ -0.17
CLK3-213ENST00000563842 RIF1Q5UIP0 2472 aaKnown RBP14□□□□□ -0.17
CLK3-213ENST00000563842 RALGAPA1Q6GYQ0 2036 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 A0A0A0MRY4 1105 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 PIK3R2O00459 728 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 CAPN9O14815 690 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 KAT7O95251 611 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 LATS1O95835 1130 aa13.99□□□□□ -0.17
CLK3-213ENST00000563842 CYBBP04839 570 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms