RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CFAP57Q96MR6 1250 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 GCNAQ96QF7 691 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 NPY6RQ99463 290 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 TRIM62Q9BVG3 475 aa17.34■□□□□ 0.37
VPS4A-202ENST00000562754 HELZP42694 1942 aaKnown RBP17.33■□□□□ 0.37
VPS4A-202ENST00000562754 MDM4O15151 490 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 CCP110O43303 1012 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 MOCS3O95396 460 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 FGF19O95750 216 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 TBX18O95935 607 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 RALAP11233 206 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 CEBPBP17676 345 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 NOS2P35228 1153 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 PTPN9P43378 593 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 NOP2P46087 812 aaKnown RBP17.33■□□□□ 0.36
VPS4A-202ENST00000562754 TUBP50607 506 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 ZNF143P52747 638 aaPredicted RBP17.33■□□□□ 0.36
VPS4A-202ENST00000562754 TEAD2Q15562 447 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 CLUL1Q15846 466 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 C15orf59Q2T9L4 293 aaPredicted RBP17.33■□□□□ 0.36
VPS4A-202ENST00000562754 CCDC14Q49A88 953 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 RAB6CQ53S08 254 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 TAC4Q86UU9 113 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 ITFG1Q8TB96 612 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 MRPS31Q92665 395 aaKnown RBP17.33■□□□□ 0.36
VPS4A-202ENST00000562754 NT5C3BQ969T7 300 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 TBCBQ99426 244 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 CNPY3Q9BT09 278 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 RAB6CQ9H0N0 254 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 ADAM7Q9H2U9 754 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 ATXN3LQ9H3M9 355 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 CALCOCO1Q9P1Z2 691 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 CAPN6Q9Y6Q1 641 aa17.33■□□□□ 0.36
VPS4A-202ENST00000562754 REV3LO60673 3130 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 CLUHO75153 1309 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 GRID2IPA4D2P6 1211 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 TMEM110-MUSTN1A8MSY1 372 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 CAPN9O14815 690 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 COCHO43405 550 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 BUB1BO60566 1050 aaPredicted RBP17.32■□□□□ 0.36
VPS4A-202ENST00000562754 IGLV3-25P01717 112 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 PSMA2P25787 234 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 SDC4P31431 198 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 SULT1E1P49888 294 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 ITIH3Q06033 890 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 SLC25A52Q3SY17 297 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 C10orf120Q5SQS8 335 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 HECTD3Q5T447 861 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 SH3PXD2AQ5TCZ1 1133 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 TXNDC8Q6A555 127 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 POTEHQ6S545 545 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 RSRC2Q7L4I2 434 aaKnown RBP17.32■□□□□ 0.36
VPS4A-202ENST00000562754 BNIPLQ7Z465 357 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 ZNF276Q8N554 614 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 SMRP1Q8NCR6 262 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 ADAM32Q8TC27 787 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 RNF139Q8WU17 664 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 ING5Q8WYH8 240 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 SLC22A12Q96S37 553 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 IRX2Q9BZI1 471 aaPredicted RBP17.32■□□□□ 0.36
VPS4A-202ENST00000562754 SMOC2Q9H3U7 446 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 GOLPH3Q9H4A6 298 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 UBE2ZQ9H832 354 aaPredicted RBP17.32■□□□□ 0.36
VPS4A-202ENST00000562754 TRPC7Q9HCX4 862 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 DOCK8Q8NF50 2099 aa17.32■□□□□ 0.36
VPS4A-202ENST00000562754 SZT2Q5T011 3432 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 MYO1FO00160 1098 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 MSI1O43347 362 aaKnown RBP17.31■□□□□ 0.36
VPS4A-202ENST00000562754 PROSCO94903 275 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 OLFM2O95897 454 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 TRUB2O95900 331 aaKnown RBP17.31■□□□□ 0.36
VPS4A-202ENST00000562754 ATP11AP98196 1134 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 EFEMP1Q12805 493 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 MESDQ14696 234 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 CDO1Q16878 200 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 GPR158Q5T848 1215 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 DAB2IPQ5VWQ8 1189 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 ARFGAP1Q8N6T3 406 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 NIPA2Q8N8Q9 360 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 LRRC57Q8N9N7 239 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 PPM1EQ8WY54 764 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 CENPIQ92674 756 aaPredicted RBP17.31■□□□□ 0.36
VPS4A-202ENST00000562754 RNF38Q9H0F5 515 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 WDR6Q9NNW5 1121 aaKnown RBP17.31■□□□□ 0.36
VPS4A-202ENST00000562754 OLA1Q9NTK5 396 aaKnown RBP17.31■□□□□ 0.36
VPS4A-202ENST00000562754 RRN3Q9NYV6 651 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 IP6K2Q9UHH9 426 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 SFMBT1Q9UHJ3 866 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 CD207Q9UJ71 328 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 RASAL2Q9UJF2 1139 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 STAP1Q9ULZ2 295 aa17.31■□□□□ 0.36
VPS4A-202ENST00000562754 MRPS23Q9Y3D9 190 aaKnown RBP17.31■□□□□ 0.36
VPS4A-202ENST00000562754 NUP210Q8TEM1 1887 aaPredicted RBP17.31■□□□□ 0.36
VPS4A-202ENST00000562754 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.3■□□□□ 0.36
VPS4A-202ENST00000562754 H3BQ06 376 aaPredicted RBP17.3■□□□□ 0.36
VPS4A-202ENST00000562754 ZNF197O14709 1029 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 IRAK2O43187 625 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 FSHRP23945 695 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 MAN1A1P33908 653 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 ATXN1P54253 815 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms