RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 IL37Q9NZH6 218 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 NUDT5Q9UKK9 219 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 PKD1L2Q7Z442 2459 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 TCRBV21S2A2A0A5A6 115 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 FAM92AA1XBS5 289 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 MAPK13O15264 365 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 KIF20AO95235 890 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 ITPKAP23677 461 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 TNFRSF4P43489 277 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 ADAM9Q13443 819 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 NFIL3Q16649 462 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 ZNF394Q53GI3 561 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 LYSMD4Q5XG99 296 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 SLC23A3Q6PIS1 610 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 UNC93AQ86WB7 457 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 PHTF2Q8N3S3 785 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 SEMA4DQ92854 862 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 ARID3AQ99856 593 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 SLC32A1Q9H598 525 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 CSNK1G1Q9HCP0 422 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 PILRBQ9UKJ0 227 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 ATP6V1DQ9Y5K8 247 aa20.04■□□□□ 0.8
VPS35-202ENST00000561713 SPAARA0A1B0GVQ0 90 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 E2F8A0AVK6 867 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 HHLA1C9JL84 531 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 TRIM24O15164 1050 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 CILPO75339 1184 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 PSMC2P35998 433 aaKnown RBP20.03■□□□□ 0.8
VPS35-202ENST00000561713 TUBP50607 506 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 SPDYCQ5MJ68 293 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 SNX30Q5VWJ9 437 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 PIP4P1Q86T03 277 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 DEFB119Q8N690 84 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 ZCCHC14Q8WYQ9 949 aaKnown RBP20.03■□□□□ 0.8
VPS35-202ENST00000561713 CYFIP2Q96F07 1278 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 NT5C1AQ9BXI3 368 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 NMUR1Q9HB89 426 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 TMEM8AQ9HCN3 771 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 KLK13Q9UKR3 277 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 PI4KAP42356 2102 aa20.03■□□□□ 0.8
VPS35-202ENST00000561713 A0A1W2PQH9 124 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 CFIP05156 583 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 ACO1P21399 889 aaKnown RBP20.02■□□□□ 0.8
VPS35-202ENST00000561713 MXI1P50539 228 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 SIM1P81133 766 aaPredicted RBP20.02■□□□□ 0.8
VPS35-202ENST00000561713 SEMA3BQ13214 749 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 BYSLQ13895 437 aaKnown RBP20.02■□□□□ 0.8
VPS35-202ENST00000561713 ANO4Q32M45 955 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 ERLEC1Q96DZ1 483 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 HNRNPABQ99729 332 aaKnown RBP20.02■□□□□ 0.8
VPS35-202ENST00000561713 TLR8Q9NR97 1041 aaKnown RBP20.02■□□□□ 0.8
VPS35-202ENST00000561713 TBC1D14Q9P2M4 693 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 NEUROG3Q9Y4Z2 214 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 ITPR1Q14643 2758 aa20.02■□□□□ 0.8
VPS35-202ENST00000561713 CACNA1EQ15878 2313 aa20.01■□□□□ 0.79
VPS35-202ENST00000561713 TBC1D3BA6NDS4 549 aa20.01■□□□□ 0.79
VPS35-202ENST00000561713 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.01■□□□□ 0.79
VPS35-202ENST00000561713 RPL13P26373 211 aaKnown RBP20.01■□□□□ 0.79
VPS35-202ENST00000561713 DCAF17Q5H9S7 520 aaPredicted RBP20.01■□□□□ 0.79
VPS35-202ENST00000561713 PEAR1Q5VY43 1037 aaPredicted RBP20.01■□□□□ 0.79
VPS35-202ENST00000561713 TMEM25Q86YD3 366 aa20.01■□□□□ 0.79
VPS35-202ENST00000561713 GTPBP2Q9BX10 602 aaKnown RBP20.01■□□□□ 0.79
VPS35-202ENST00000561713 FBXO44Q9H4M3 255 aa20.01■□□□□ 0.79
VPS35-202ENST00000561713 CYP3A43Q9HB55 503 aa20.01■□□□□ 0.79
VPS35-202ENST00000561713 ADAMTS9Q9P2N4 1935 aa20.01■□□□□ 0.79
VPS35-202ENST00000561713 TRIM49BA6NDI0 452 aa20■□□□□ 0.79
VPS35-202ENST00000561713 TULP3O75386 442 aa20■□□□□ 0.79
VPS35-202ENST00000561713 RPL6Q02878 288 aaKnown RBP20■□□□□ 0.79
VPS35-202ENST00000561713 GAD2Q05329 585 aa20■□□□□ 0.79
VPS35-202ENST00000561713 PPP1R26Q5T8A7 1209 aaPredicted RBP20■□□□□ 0.79
VPS35-202ENST00000561713 KRT39Q6A163 491 aa20■□□□□ 0.79
VPS35-202ENST00000561713 ETFBKMTQ8IXQ9 262 aa20■□□□□ 0.79
VPS35-202ENST00000561713 FMR1NBQ8N0W7 255 aaPredicted RBP20■□□□□ 0.79
VPS35-202ENST00000561713 ZNF513Q8N8E2 541 aaPredicted RBP20■□□□□ 0.79
VPS35-202ENST00000561713 BHMTQ93088 406 aa20■□□□□ 0.79
VPS35-202ENST00000561713 KLF16Q9BXK1 252 aaPredicted RBP20■□□□□ 0.79
VPS35-202ENST00000561713 SPHK2Q9NRA0 654 aa20■□□□□ 0.79
VPS35-202ENST00000561713 COMMD8Q9NX08 183 aa20■□□□□ 0.79
VPS35-202ENST00000561713 HCN2Q9UL51 889 aa20■□□□□ 0.79
VPS35-202ENST00000561713 SLC6A14Q9UN76 642 aa20■□□□□ 0.79
VPS35-202ENST00000561713 SCML2Q9UQR0 700 aa20■□□□□ 0.79
VPS35-202ENST00000561713 MSRB2Q9Y3D2 182 aa20■□□□□ 0.79
VPS35-202ENST00000561713 PCNX2A6NKB5 2137 aa20■□□□□ 0.79
VPS35-202ENST00000561713 UPK3BL1B0FP48 263 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 UPK3BL2E5RIL1 263 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 NEDD8-MDP1E9PL57 170 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 HOXC11O43248 304 aaPredicted RBP19.99■□□□□ 0.79
VPS35-202ENST00000561713 AP5Z1O43299 807 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 GREM1O60565 184 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 EPB41P11171 864 aaKnown RBP19.99■□□□□ 0.79
VPS35-202ENST00000561713 GABRG2P18507 467 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 DPP6P42658 865 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 WASP42768 502 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 PRCPP42785 496 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 PMS1P54277 932 aaKnown RBP19.99■□□□□ 0.79
VPS35-202ENST00000561713 FAM193AP78312 1265 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 GFPT1Q06210 699 aaPredicted RBP19.99■□□□□ 0.79
VPS35-202ENST00000561713 DUOXA1Q1HG43 343 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 EDRF1Q3B7T1 1238 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 C10orf76Q5T2E6 689 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms